2023-11-15 REL PDBe PDBe PDBe 2022-04-13 2023-03-22 2023-03-22 2023-11-15 Academy of Finland 314672 Finland Signal peptide mimicry primes Sec61 for client-selective inhibition Rehan S Paavilainen O V Sec61 Translocon, cryoEM, Membrane Protein, Protein biogenesis Rehan S Tranter D Sharp PP Craven GB Lowe E Anderl JL Muchamuel T Abrishami V Kuivanen S Wenzell NA Jennings A Kalyanaraman C Strandin T Javanainen M Vapalahti O Jacobson MP McMinn D Kirk CJ Huiskonen JT Taunton J Paavilainen VO Signal peptide mimicry primes Sec61 for client-selective inhibition. Nat.Chem.Biol. US 19 1054 1062 2023 37169961 doi:10.1038/s41589-023-01326-1 1552-4469 EMD-3068 other EM volume
Mammalian Ribosome-Sec61
 7zl3 FULLOVERLAP Protein conducting Sec61 translocon complex Protein conducting Sec61 translocon complex 0 1 2 4 3.4 Protein conducting Sec61 translocon complex 1 1 2 Ovis aries Signal peptide mimic 1 4 synthetic construct Protein transport protein Sec61 subunit alpha Ovis aries 0.052034062 1 LEVO MGIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPYWMRVILASNRGTLMALGI SPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMTITIGQSIVYVMTGMYGDPSEMGAGVCLLITIQLFVAGLI VLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPN LMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLL GTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVM RGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF A0A6P3YN15 Protein transport protein Sec61 subunit gamma Ovis aries 0.007752324999999999 1 LEVO MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVGG W5PP18 Protein transport protein Sec61 subunit beta Ovis aries 0.002486056 1 LEVO (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) Cyclic depsipeptide signal peptide mimic synthetic construct 0.0011019659999999998 1 LEVO (JMO)(3EG)(MLE)(3EG)(JMX)L singleParticle particle 7.4 50.0 HEPS HEPES 300.0 NaCl Sodium chloride 200.0 KoAc Potassium acetate 10.0 MgAc Magnesium acetate 1.0 DDT Dithiothritol Quantifoil R1.2/1.3 COPPER 400 CARBON HOLEY 0.2 GLOW DISCHARGE AIR ETHANE 90 283 LEICA EM GP
Purified Ribosome-Sec61 complex
 FEI TITAN KRIOS FLOOD BEAM OTHER FIELD EMISSION GUN 300 0.6 1.2 GATAN K3 (6k x 4k) 30294 47.0 1
30294 movies
1089031 EMD-3245 3.2 FSC 0.143 CUT-OFF 136000 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_14776.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 800 800 800 0 0 0 800 800 800 664.0 664.0 664.0 90.0 90.0 90.0 Y X Z -0.010949552 0.033659477 0.00001483572 0.00089833565 0.83 0.83 0.83 0.00275 AUTHOR 3JC2 PDB experimental model emd_14776_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 800 800 800 0 0 0 800 800 800 664.0 664.0 664.0 90.0 90.0 90.0 Y X Z -0.020561952 0.062781796 0.000017163244 0.0024988267 0.83 0.83 0.83 AUTHOR emd_14776_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 800 800 800 0 0 0 800 800 800 664.0 664.0 664.0 90.0 90.0 90.0 Y X Z -0.021131504 0.062655196 0.000013495276 0.0025070582 0.83 0.83 0.83 AUTHOR