<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-1464" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2008-01-10</deposition>
         <header_release>2008-01-10</header_release>
         <map_release>2008-02-22</map_release>
         <update>2011-05-26</update>
      </key_dates>
      <title>Adenovirus serotype 5 hexon mediates liver gene transfer.</title>
      <authors_list>
         <author>Waddington SN</author>
         <author>McVey JH</author>
         <author>Bhella D</author>
         <author>Parker AL</author>
         <author>Barker K</author>
         <author>Atoda H</author>
         <author>Pink R</author>
         <author>Buckley SM</author>
         <author>Greig JA</author>
         <author>Denby L</author>
         <author>Custers J</author>
         <author>Morita T</author>
         <author>Francischetti IM</author>
         <author>Monteiro RQ</author>
         <author>Barouch DH</author>
         <author>van Rooijen N</author>
         <author>Napoli C</author>
         <author>Havenga MJ</author>
         <author>Nicklin SA</author>
         <author>Baker AH</author>
      </authors_list>
      <keywords>
         </keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Waddington SN</author>
               <author order="2">McVey JH</author>
               <author order="3">Bhella D</author>
               <author order="4">Parker AL</author>
               <author order="5">Barker K</author>
               <author order="6">Atoda H</author>
               <author order="7">Pink R</author>
               <author order="8">Buckley SM</author>
               <author order="9">Greig JA</author>
               <author order="10">Denby L</author>
               <author order="11">Custers J</author>
               <author order="12">Morita T</author>
               <author order="13">Francischetti IM</author>
               <author order="14">Monteiro RQ</author>
               <author order="15">Barouch DH</author>
               <author order="16">van Rooijen N</author>
               <author order="17">Napoli C</author>
               <author order="18">Havenga MJ</author>
               <author order="19">Nicklin SA</author>
               <author order="20">Baker AH</author>
               <title>Adenovirus serotype 5 hexon mediates liver gene transfer.</title>
               <journal>CELL(CAMBRIDGE,MASS.)</journal>
               <volume>132</volume>
               <first_page>397</first_page>
               <last_page>409</last_page>
               <year>2008</year>
               <external_references type="PUBMED">18267072</external_references>
               <external_references type="DOI">doi:10.1016/j.cell.2008.01.016</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>Adenovirus type 5 bound to Factor X</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Adenovirus type 5 bound to Factor X</name>
            <number_unique_components>2</number_unique_components>
         </sample_supramolecule>
         <virus_supramolecule supramolecule_id="1">
            <name synonym="Ad5">Human adenovirus 5</name>
            <sci_species_name ncbi="28285">Human adenovirus 5</sci_species_name>
            <natural_host database="NCBI">
               <organism ncbi="9606">Homo sapiens</organism>
               <synonym_organism>VERTEBRATES</synonym_organism>
            </natural_host>
            <host_system database="NCBI">
               </host_system>
            <virus_shell shell_id="1">
               <name>Ad5</name>
               <diameter units="&#8491;">900</diameter>
               <triangulation>25</triangulation>
            </virus_shell>
            <virus_type>VIRION</virus_type>
            <virus_isolate>SEROTYPE</virus_isolate>
            <virus_enveloped>false</virus_enveloped>
            <virus_empty>false</virus_empty>
            <syn_species_name>Ad5</syn_species_name>
         </virus_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <ligand macromolecule_id="1">
            <name synonym="FX">Factor X</name>
            <natural_source database="NCBI">
               <organism>
                  </organism>
               <tissue>blood/liver</tissue>
            </natural_source>
            <details>Commercially purified Factor X from
 Haematologic Technologies Inc.</details>
            <number_of_copies>240</number_of_copies>
            <oligomeric_state>monomer</oligomeric_state>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
         </ligand>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <buffer>
                  <ph>7.4</ph>
                  <details>10 nM Tris 100 mM NaCl 5 mM CaCl</details>
               </buffer>
               <grid>
                  <details>400 mesh copper R2/2 quantifoils</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <method>5 ul of virus-ligand complex was loaded onto a freshly
        glow-discharged grid and blotted until the filter paper detached.</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>JEOL 1200EXII</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>LAB6</electron_source>
               <acceleration_voltage units="kV">120</acceleration_voltage>
               <nominal_cs units="mm">3.4</nominal_cs>
               <nominal_defocus_min units="&#181;m">0.668</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">3.9</nominal_defocus_max>
               <nominal_magnification>30000.0</nominal_magnification>
               <calibrated_magnification>29128.0</calibrated_magnification>
               <specimen_holder_model>OTHER</specimen_holder_model>
               <temperature>
                  <temperature_average units="K">108</temperature_average>
               </temperature>
               <alignment_procedure>
                  <legacy>
                     <astigmatism>Astigmatism corrected at 100,000 times magnification</astigmatism>
                  </legacy>
               </alignment_procedure>
               <details>Defocus Pairs were recorded</details>
               <date>2007-06-01</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                     <digitization_details>
                        <scanner>OTHER</scanner>
                        <sampling_interval units="&#181;m">6.35</sampling_interval>
                     </digitization_details>
                     <number_real_images>21</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">10</average_electron_dose_per_image>
                     <details>Images were binned by a factor of 3</details>
                     <bits_per_pixel>16.</bits_per_pixel>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>side entry, liquid nitrogen cooled</specimen_holder>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <ctf_correction>
               <details>each particle was corrected and defocus paired
        particles merged</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>I</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">23.0</resolution>
               <resolution_method>OTHER</resolution_method>
               <software_list>
                  <software>
                     <name>PFT3DR2, MRC</name>
                  </software>
               </software_list>
               <number_images_used>305</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="44496">
      <file>emd_1464.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>225</col>
         <row>225</row>
         <sec>225</sec>
      </dimensions>
      <origin>
         <col>-112</col>
         <row>-112</row>
         <sec>-112</sec>
      </origin>
      <spacing>
         <x>225</x>
         <y>225</y>
         <z>225</z>
      </spacing>
      <cell>
         <a units="&#8491;">1471.5</a>
         <b units="&#8491;">1471.5</b>
         <c units="&#8491;">1471.5</c>
         <alpha units="deg">90</alpha>
         <beta units="deg">90</beta>
         <gamma units="deg">90</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-963.807999999999993</minimum>
         <maximum>1253.8900000000001</maximum>
         <average>25.505600000000001</average>
         <std>124.706999999999994</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">6.54</x>
         <y units="&#8491;">6.54</y>
         <z units="&#8491;">6.54</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>293.0</level>
         </contour>
      </contour_list>
      <annotation_details>Three-dimensional reconstruction of Adenovirus
      type 5 bound to Factor X</annotation_details>
      <details>::::EMDATABANK.org::::EMD-1464::::</details>
   </map>
</emd>