2023-12-13 REL PDBe PDBe PDBe 2022-03-25 2022-04-27 2022-04-27 2023-12-13 Spanish Ministry of Economy and Competitiveness RTI2018095700-B-I00 Spain Other government PRE_2018_1_0102 Other government CO-2020/00001 Map_spike_protein_SARSCoV2 Abrescia NGA Stagnoli AS Connell SR Jimenez-Oses G Spike SARS-CoV2, glycans, cryo-EM, VIRAL PROTEIN Stagnoli S Peccati F Connell SR Martinez-Castillo A Charro D Millet O Bruzzone C Palazon A Arda A Jimenez-Barbero J Ereno-Orbea J Abrescia NGA Jimenez-Oses G Assessing the Mobility of Severe Acute Respiratory Syndrome Coronavirus-2 Spike Protein Glycans by Structural and Computational Methods. Front Microbiol CH 13 870938 870938 2022 35495643 doi:10.3389/fmicb.2022.870938 1664-302X Severe acute respiratory syndrome coronavirus 2 Severe acute respiratory syndrome coronavirus 2 0 1
the ectodomain of the Spike protein was expressed by transient transfection of HEK293F suspension cells and purified according to described protocols.
Severe acute respiratory syndrome coronavirus 2 0.486 SARS-Cov-2 SPIKE PROTEIN Severe acute respiratory syndrome coronavirus 2
Vector pCAGGS
Homo sapiens DEXTRO MFMPSSFSYSSWATCWLLCCLIILAKATMFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPASVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPSGRLVPRGSPGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGHHHHHH singleParticle particle 0.06 8.0 300.0 NaCl sodium chloride 20.0 (HOCH2)3CNH2 Tris
buffer was filtered before use to avoid microbial contamination
 C-flat-1.2/1.3 COPPER 300 CARBON CONTINUOUS GLOW DISCHARGE AIR 0.0002
8 mA
 ETHANE 100 287.15 FEI VITROBOT MARK III
The protein was expressed by transient transfection of HEK293F suspension cells and purified seven days post-transfection
 TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 0.8 2.3000000000000003 105000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K3 (6k x 4k) 12478 1.24 49.6 GATAN K3 (6k x 4k) 9264 1.04 52.0 1
the novo 3D model regeneration by SGD in Relion
 C3 4.1 FSC 0.143 CUT-OFF cryoSPARC 22854 MAXIMUM LIKELIHOOD RELION 3.01 MAXIMUM LIKELIHOOD cryoSPARC 2 cryoSPARC emd_14621.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 192 192 192 0 0 0 192 192 192 318.72 318.72 318.72 90.0 90.0 90.0 X Y Z -1.3178562 2.6468053 0.0086776195 0.09615927 1.66 1.66 1.66 0.462 AUTHOR Map_spike_protein_SARSCoV2 6XR8 PDB experimental model OTHER REAL emd_14621_msk_1.map emd_14621_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 192 192 192 0 0 0 192 192 192 318.72 318.72 318.72 90.0 90.0 90.0 X Y Z -0.5369654 1.5968398 0.0067648957 0.084667146 1.66 1.66 1.66 AUTHOR half_A_Map_spike_protein_SARSCoV2 emd_14621_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 192 192 192 0 0 0 192 192 192 318.72 318.72 318.72 90.0 90.0 90.0 X Y Z -0.5228472 1.6978256 0.006697175 0.0845962 1.66 1.66 1.66 AUTHOR half_B_Map_spike_protein_SARSCoV2