2024-07-17 REL PDBe PDBe PDBe 2022-03-16 2023-03-29 2023-03-29 2024-07-17 German Research Foundation (DFG) Germany European Research Council (ERC) European Union Mot1E1434Q:TBP:DNA - substrate recognition state Woike S Eustermann S Jung J Wenzl SJ Hagemann G Bartho JD Lammens K Butryn A Herzog F Hopfner K-P Swi2/Snf2 protein, remodeler, transcription initiation, TRANSCRIPTION Woike S Eustermann S Jung J Wenzl SJ Hagemann G Bartho J Lammens K Butryn A Herzog F Hopfner KP Structural basis for TBP displacement from TATA box DNA by the Swi2/Snf2 ATPase Mot1. Nat.Struct.Mol.Biol. US 30 640 649 2023 37106137 doi:10.1038/s41594-023-00966-0 1545-9985 7z7n FULLOVERLAP Mot1E1434Q:TBP:DNA complex Mot1E1434Q:TBP:DNA complex 0 1 2 3 4 Chaetomium thermophilum DNA (36-MER) DNA molecule 0.011155128 1 (DC)(DG)(DG)(DC)(DC)(DG)(DG)(DG)(DC)(DG)(DC)(DC)(DC)(DG)(DG)(DC)(DA)(DT)(DG)(DG) (DC)(DG)(DG)(DC)(DC)(DT)(DA)(DT)(DA)(DA)(DA)(DA)(DG)(DG)(DG)(DC) DNA DNA (36-MER) DNA molecule 0.011008015999999999 1 (DG)(DC)(DC)(DC)(DT)(DT)(DT)(DT)(DA)(DT)(DA)(DG)(DG)(DC)(DC)(DG)(DC)(DC)(DA)(DT) (DG)(DC)(DC)(DG)(DG)(DG)(DC)(DG)(DC)(DC)(DC)(DG)(DG)(DC)(DC)(DG) DNA Putative tata-box binding protein Chaetomium thermophilum DSM 1495 / CBS 144.50 / IMI 039719 0.029676973 1 Escherichia coli BL21(DE3) LEVO MGSSHHHHHHSSGENLYFQGHMEAIQTHPANAAQAKAFTAPGSLSFPGGASEIANSTAPTNGASNGGQQQGVQATSGAGV TPATPAATPGAGPAGPSGITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVT GAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHNFSSYEPELFPGLIYRMIKPKIVL LIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRKV G0SAL6 Helicase-like protein Chaetomium thermophilum DSM 1495 / CBS 144.50 / IMI 039719 0.211831703 1 Escherichia coli BL21(DE3) LEVO MATRLDRLVTILETGSTRLIRDTAVNQLADWQKQHPEELFNLLSRVVPYLRHKDWETRTTAAKAIGKIIENAPLYDPNAG QDEAAPEPTNGSFEVKKEEEKDVLEQDNFFRLESLDVATIVKYGRPLLRGGPVDYNLAALDPQKRLAHLKKTLNGRLGLL GRVFEDEEMPVEQIASPITPNDAAGANGVGRQDGASNDNQSQAIDESKMSARQLNVLKRKRKREAQKAAQGKSGFGDLSL RRSTTAGSDAFGEDTPMPDADSKKNKLAEYFSLDRPENTEEDTKIVSEFKGPVLPIKSEIEADDSLEGAEWPFERLCEFL KVDLFDPQWETRHGAAMGLREVIRVHGAGAGRRRGKTRKENNDLNRQWLDDLAYRLLCVLMLDKFTDYSSDTSVAPIRET VGQTLGAVLRHISVESVHAIYRLLYCMVTQEDLPSEQNMWAVCHGGMVGLRYVVAVRKDLLLQDGDMIDGVVRCVMQGLG DIDDDVRSVSAATLIPMAKEFVMMRRSALDSLINIVWESLSNLGDDLSASTGKIMDLLATLCSFPEVLEAMKVSASQDEE RSFTLLVPRLYPFLRHTITSVRLAVLKALMTFANLGGETSQGWLNGRILRLIFQNIIVERDQDTLNMSLELWTTLVRRLA ARDPAILADEFEAHAEPMMQLALHPIGVPRHPIPMNPALFQKPSGGTYSLPGASQTNSRRSSPPEGERATKRRRKSTKAE DVAPSTHTHDVDGHMIQGEVDLVGVDVLIRSRISAAKAMGLIMSFIPTPRLASYDTAVLQALSSPYASTQLAAAMVIDEY AKNCSTPEVASRFIEPLQKIIDLERPSHYRDLVTYVQRVRSASQQLINLFRDHGKVSQGKLPTLAVVVQGEPEAGPGAFS IANAEKVVNEDFERLKRLMAPGQRLIALPQLNEAREQTVEVIEEAKAAKEARDARIKAAAACALVAMKVLPKKPSPLIKA IMDSIKTEENQELQSRSAATIARLVQLFTESGRRGPAEKVVANLVKFSCVEVAETPEFPIHAHKTNVILSMQKEEDRVDH PDAVKYAREAKAARITRRGAKEALEILSKNFGAELLERVPTLRTFMEEPLVRAFSGDLPPEARDPENAFGQEIVDAMSVI RTMTPTLHPALHPFVMQQVPLVIKALRSDLSVFRYMAAKCMATICSVITVDGMTALVEKVLPSINNPLDLSFRQGAIEVI YHLIAVMGDAILPYVIFLIVPVLGRMSDSDNQIRLIATTSFATLVKLVPLEAGIPDPPGLSEELLKGRDRERTFIAQLLD PKKIEPFKIPVAIKAELRSYQQEGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIVASDHHQRAEEFARTGAPEVRKLPS LIICPPTLSGHWQQEIKTYAPFLTVTAYVGSPAERRAMKDSLDKTDIVITSYDVCRNDIDVIEKYNWNYCVLDQGHLIKN PKAKITLAVKRLTSNHRLILTGTPIQNNVLELWSLFDFLMPGFLGAEKVFLDRFAKPIANSRYSKASSKEQEAGALAIEA LHKQVLPFLLRRLKEEVLNDLPPKILQNYYCDLSDLQRKLFEDFTKREGKKITETAGRDDKEAKQHIFQALQYMRKLCNS PALVMKPGHKAYEDTQKYLAKHGTTLEDPIHAPKLGALRDLLVDCGIGVEGQESSDPLYTPIKPHRALIFCQMKEMLDMV QNTVLKQMLPSVSYLRLDGSVEANKRQDIVNKFNSDPSYDVLLLTTSVGGLGLNLTGADTVIFVEHDWNPQKDLQAMDRA HRIGQKKVVNVYRIITRGTLEEKILSLQRFKIDVASTVVNQQNAGLATMDTDQILDLFNLGESGPSLITDNKESIEGREE DMVDIETGDVRRPGKKAAWLEGLGELWDNAQYEESFDLDGFLKTMQAAAWSHPQFEK G0S6C0 singleParticle particle 0.5 7.5 20.0 HEPES 60.0 sodium chloride 5.0 magnesium chloride
Incubation with 1 mM ATP before blotting. 0.05% beta-octyl glucoside added before blotting.
 Quantifoil R2/1 COPPER 200 GLOW DISCHARGE AIR ETHANE 90 283 LEICA EM GP
Incubation on the grid for 20 seconds before plunging..
FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 1.2 2.8000000000000003 130000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K2 SUMMIT (4k x 4k) COUNTING 48.0 1 6G7E C1 5.1 FSC 0.143 CUT-OFF cryoSPARC 44000 MAXIMUM LIKELIHOOD cryoSPARC MAXIMUM LIKELIHOOD cryoSPARC emd_14534.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 280 280 280 0 0 0 280 280 280 296.52002 296.52002 296.52002 90.0 90.0 90.0 X Y Z -0.4713565 1.0558821 -0.001476717 0.035656493 1.059 1.059 1.059 0.219 AUTHOR Main map emd_14534_msk_1.map emd_14534_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 280 280 280 0 0 0 280 280 280 296.52002 296.52002 296.52002 90.0 90.0 90.0 X Y Z -0.20086324 0.69492996 0.00057689997 0.03243435 1.059 1.059 1.059 AUTHOR Halfmap B emd_14534_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 280 280 280 0 0 0 280 280 280 296.52002 296.52002 296.52002 90.0 90.0 90.0 X Y Z -0.2019566 0.6879622 0.0006009755 0.03261454 1.059 1.059 1.059 AUTHOR Halfmap A