2025-07-09 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin em_software _em_admin.last_update _em_software.name STRUCTURE_SUMMARY citation struct _citation.journal_volume _citation.page_first _citation.page_last _struct.title DATA_COLLECTION chem_comp_atom chem_comp_bond em_admin _em_admin.last_update STRUCTURE_SUMMARY em_admin em_software pdbx_entry_details _em_admin.last_update _em_software.name _pdbx_entry_details.has_protein_modification PDBe PDBe 2022-03-03 2022-08-31 2022-08-31 2025-07-09 Swiss National Science Foundation 31003A_182567 Switzerland Pacesa M Jinek M CRISPR, Cas9, R-loop, substrate binding, off-target, HYDROLASE Pacesa M Loeff L Querques I Muckenfuss LM Sawicka M Jinek M Nature UK 609 191 196 2022 36002571 doi:10.1038/s41586-022-05114-0 1476-4687 0006 NATUAS 7z4e FULLOVERLAP Ternary complex of SpCas9-sgRNA bound to a 8 nucleotide complementary DNA substrate Ternary complex of SpCas9-sgRNA bound to a 8 nucleotide complementary DNA substrate 0 1 2 3 4 Streptococcus pyogenes CRISPR-associated endonuclease Cas9/Csn1 Streptococcus pyogenes 0.15858878099999998 1 Escherichia coli LEVO MDKKYSIGLAIGTNSVGWAVITDEYKVPSKKFKVLGNTDRHSIKKNLIGALLFDSGETAEATRLKRTARRRYTRRKNRIC YLQEIFSNEMAKVDDSFFHRLEESFLVEEDKKHERHPIFGNIVDEVAYHEKYPTIYHLRKKLVDSTDKADLRLIYLALAH MIKFRGHFLIEGDLNPDNSDVDKLFIQLVQTYNQLFEENPINASGVDAKAILSARLSKSRRLENLIAQLPGEKKNGLFGN LIALSLGLTPNFKSNFDLAEDAKLQLSKDTYDDDLDNLLAQIGDQYADLFLAAKNLSDAILLSDILRVNTEITKAPLSAS MIKRYDEHHQDLTLLKALVRQQLPEKYKEIFFDQSKNGYAGYIDGGASQEEFYKFIKPILEKMDGTEELLVKLNREDLLR KQRTFDNGSIPHQIHLGELHAILRRQEDFYPFLKDNREKIEKILTFRIPYYVGPLARGNSRFAWMTRKSEETITPWNFEE VVDKGASAQSFIERMTNFDKNLPNEKVLPKHSLLYEYFTVYNELTKVKYVTEGMRKPAFLSGEQKKAIVDLLFKTNRKVT VKQLKEDYFKKIECFDSVEISGVEDRFNASLGTYHDLLKIIKDKDFLDNEENEDILEDIVLTLTLFEDREMIEERLKTYA HLFDDKVMKQLKRRRYTGWGRLSRKLINGIRDKQSGKTILDFLKSDGFANRNFMQLIHDDSLTFKEDIQKAQVSGQGDSL HEHIANLAGSPAIKKGILQTVKVVDELVKVMGRHKPENIVIEMARENQTTQKGQKNSRERMKRIEEGIKELGSQILKEHP VENTQLQNEKLYLYYLQNGRDMYVDQELDINRLSDYDVDAIVPQSFLKDDSIDNKVLTRSDKNRGKSDNVPSEEVVKKMK NYWRQLLNAKLITQRKFDNLTKAERGGLSELDKAGFIKRQLVETRQITKHVAQILDSRMNTKYDENDKLIREVKVITLKS KLVSDFRKDFQFYKVREINNYHHAHDAYLNAVVGTALIKKYPKLESEFVYGDYKVYDVRKMIAKSEQEIGKATAKYFFYS NIMNFFKTEITLANGEIRKRPLIETNGETGEIVWDKGRDFATVRKVLSMPQVNIVKKTEVQTGGFSKESILPKRNSDKLI ARKKDWDPKKYGGFDSPTVAYSVLVVAKVEKGKSKKLKSVKELLGITIMERSSFEKNPIDFLEAKGYKEVKKDLIIKLPK YSLFELENGRKRMLASAGELQKGNELALPSKYVNFLYLASHYEKLKGSPEDNEQKQLFVEQHKHYLDEIIEQISEFSKRV ILADANLDKVLSAYNKHRDKPIREQAENIIHLFTLTNLGAPAAFKYFDTTIDRKRYTSTKEVLDATLIHQSITGLYETRI DLSQLGGD Q99ZW2 3.1.-.- sgRNA synthetic construct 0.033005641 1 GGGACGCAUAAAGAUGAGACGCGUUUUAGAGCUAGAAAUAGCAAGUUAAAAUAAGGCUAGUCCGUUAUCAACUUGAAAAA GUGGCACCGAGUCGGUGCUUUU Target strand of 8 nucleotide complementary DNA substrate synthetic construct 0.009182928 1 (DC)(DG)(DT)(DG)(DA)(DT)(DT)(DC)(DC)(DA)(DG)(DC)(DG)(DT)(DC)(DT)(DC)(DA)(DA)(DA) (DG)(DT)(DC)(DT)(DA)(DC)(DA)(DT)(DA)(DG) DNA Non-target strand of 8 nucleotide complementary DNA substrate synthetic construct 0.009211963 1 (DC)(DT)(DA)(DT)(DG)(DT)(DA)(DG)(DA)(DC)(DT)(DT)(DA)(DC)(DT)(DA)(DT)(DT)(DA)(DT) (DT)(DG)(DG)(DA)(DA)(DT)(DC)(DA)(DC)(DG) DNA singleParticle particle 7.5 ETHANE-PROPANE 100 293.15 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 1.0 2.4 GATAN K3 (6k x 4k) 64.23 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 5FQ5 4.14 FSC 0.143 CUT-OFF 147231 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_14494_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 249.59999 249.59999 249.59999 90.0 90.0 90.0 X Y Z -0.20777515 0.53641754 0.0017992703 0.022170957 0.65 0.65 0.65 AUTHOR ::::EMDATABANK.org::::D_1292121507:::: emd_14494_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 249.59999 249.59999 249.59999 90.0 90.0 90.0 X Y Z -0.23356095 0.5155306 0.0017937751 0.022181612 0.65 0.65 0.65 AUTHOR ::::EMDATABANK.org::::D_1292121507::::