2024-07-17 REL PDBe PDBe PDBe 2022-02-26 2022-07-20 2022-07-20 2024-07-17 Not funded Cryo-EM structure of NNRTI resistant M184I/E138K mutant HIV-1 reverse transcriptase with a DNA aptamer in complex with nevirapine Singh AK Das K Reverse transcriptase mutant, RT-aptamer complex, NNRTI resistance, Non-nucleoside inhibitor, TRANSFERASE Singh AK De Wijngaert B Bijnens M Uyttersprot K Nguyen H Martinez SE Schols D Herdewijn P Pannecouque C Arnold E Das K Cryo-EM structures of wild-type and E138K/M184I mutant HIV-1 RT/DNA complexed with inhibitors doravirine and rilpivirine. Proc.Natl.Acad.Sci.USA US 119 e2203660119 e2203660119 2022 35858448 doi:10.1073/pnas.2203660119 1091-6490 0040 PNASA6 EMD-14457 other EM volume 7z29 FULLOVERLAP NNRTI resistant M184I/E138K mutant HIV-1 reverse transcriptase with a DNA aptamer in complex with nevirapine NNRTI resistant M184I/E138K mutant HIV-1 reverse transcriptase with a DNA aptamer in complex with nevirapine 0 1 2 3 Human immunodeficiency virus type 1 BH10 HIV-1 REVERSE TRANSCRIPTASE P66 SUBUNIT with M184I mutation 1 1 Human immunodeficiency virus type 1 BH10 HIV-1 REVERSE TRANSCRIPTASE P51 SUBUNIT with E138K mutation 1 2 Human immunodeficiency virus type 1 BH10 Reverse transcriptase/ribonuclease H Human immunodeficiency virus type 1 BH10 isolate BH10 0.064019352
P66 subunit
1 Escherichia coli BL21(DE3) LEVO MVPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFACKKKDSTKWRKLVDFR ELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPA IFQSSMTKILEPFKKQNPDIVIYQYIDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDK WTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVY YDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETW ETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTE LQAIYLALQDSGLEVNIVTNSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSA P03366 2.7.7.49 p51 RT Human immunodeficiency virus type 1 BH10 isolate BH10 0.050039555
P51 subunit
1 Escherichia coli BL21(DE3) LEVO PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFREL NKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNKTPGIRYQYNVLPQGWKGSPAIF QSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWT VQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYD PSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWET WWTEYWQATWIPEWEFVNTPPLVKLWYQ P03366 DNA (38-MER) synthetic construct 0.011748525999999999 1 (DT)(DA)(DA)(DT)(DA)(DC)(OMC)(DC)(OMC)(DC)(DC)(DC)(DT)(DT)(DC)(DG)(DG)(DT)(DG) (DC)(DT)(DT)(DT)(DG)(DC)(DA)(DC)(DC)(DG)(DA)(DA)(DG)(DG)(DG)(DG)(DG)(DG)(DG) DNA 11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE 0.000266298 1 NVP singleParticle particle 0.3 8.0 10.0 NH2C(CH2OH)3HCl Tris-HCl 75.0 NaCl NaCl Quantifoil R1.2/1.3 GOLD 200 GLOW DISCHARGE AIR 0.03 ETHANE 95 281 LEICA EM GP TFS GLACIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 50.0 2.7 0.8 0.5 2.2 2.5 150000.0 NITROGEN FEI FALCON III (4k x 4k) COUNTING 1 1981 55.0 40.0 1 1323229 5HP1 C1 3.38 FSC 0.143 CUT-OFF RELION 3.1 304552 MAXIMUM LIKELIHOOD RELION 3.1 MAXIMUM LIKELIHOOD RELION 3.1 RELION 3.1 emd_14458.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 125 125 125 0 0 0 125 125 125 121.25 121.25 121.25 90.0 90.0 90.0 X Y Z -0.31102663 0.40840542 0.00023245197 0.02176636 0.97 0.97 0.97 0.021 AUTHOR 5HP1 PDB experimental model FLEXIBLE FIT Correlation coefficient REAL 163.400000000000006 emd_14458_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 125 125 125 0 0 0 125 125 125 121.25 121.25 121.25 90.0 90.0 90.0 X Y Z -0.050577004 0.0955444 0.00023658611 0.006978898 0.97 0.97 0.97 AUTHOR emd_14458_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 125 125 125 0 0 0 125 125 125 121.25 121.25 121.25 90.0 90.0 90.0 X Y Z -0.05006584 0.08998204 0.00023570727 0.0069784797 0.97 0.97 0.97 AUTHOR