<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-1434" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2007-09-26</deposition>
         <header_release>2007-09-26</header_release>
         <map_release>2011-09-30</map_release>
         <update>2012-10-10</update>
      </key_dates>
      <title>Nautilus pompilius hemocyanin: 9 A cryo-EM structure and molecular model reveal the subunit pathway and the interfaces between the 70 functional units.</title>
      <authors_list>
         <author>Gatsogiannis C</author>
         <author>Moeller A</author>
         <author>Depoix F</author>
         <author>Meissner U</author>
         <author>Markl J</author>
      </authors_list>
      <keywords>
         </keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Gatsogiannis C</author>
               <author order="2">Moeller A</author>
               <author order="3">Depoix F</author>
               <author order="4">Meissner U</author>
               <author order="5">Markl J</author>
               <title>Nautilus pompilius hemocyanin: 9 A cryo-EM structure and molecular model reveal the subunit pathway and the interfaces between the 70 functional units.</title>
               <journal>J.MOL.BIOL.</journal>
               <volume>374</volume>
               <first_page>465</first_page>
               <last_page>486</last_page>
               <year>2007</year>
               <external_references type="PUBMED">17936782</external_references>
               <external_references type="DOI">doi:10.1016/j.jmb.2007.09.036</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>Nautilus pompilius hemocyanin</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Nautilus pompilius hemocyanin</name>
            <oligomeric_state>Nautilus pompilius hemocyanin is a decamer of a 350 kDa
      subunit. Each subunit is composed by 7 paralogous O2 binding
      functional units.</oligomeric_state>
            <number_unique_components>1</number_unique_components>
            <molecular_weight>
               <theoretical units="MDa">3.5</theoretical>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="Nautilus pompilius hemocyanin">Nautilus pompilius hemocyanin</name>
            <natural_source database="NCBI">
               <organism ncbi="34573">Nautilus pompilius</organism>
               <tissue>hemolymph</tissue>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">3.5</experimental>
            </molecular_weight>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">0.4</concentration>
               <buffer>
                  <ph>7.4</ph>
                  <details>50mM Tris-HCl, 5mM CaCl2, 5mM MgCl2, 150mM NaCl</details>
               </buffer>
               <staining>
                  <type>NEGATIVE</type>
                  <details>cryo-EM, no stain</details>
               </staining>
               <grid>
                  <details>400 mesh copper</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_temperature units="K">86</chamber_temperature>
                  <instrument>HOMEMADE PLUNGER</instrument>
                  <details>Vitrification instrument: home made. Vitrification carried out in 100 percent nitrogen atmosphere</details>
                  <method>Single side blotting and rapid plunging</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TECNAI F30</microscope>
               <illumination_mode>OTHER</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">200</acceleration_voltage>
               <nominal_cs units="mm">1.2</nominal_cs>
               <nominal_defocus_min units="&#181;m">0.8</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">3.3</nominal_defocus_max>
               <nominal_magnification>49000.0</nominal_magnification>
               <calibrated_magnification>49000.0</calibrated_magnification>
               <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
               <temperature>
                  <temperature_average units="K">86</temperature_average>
               </temperature>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                     <digitization_details>
                        <scanner>PRIMESCAN</scanner>
                        <sampling_interval units="&#181;m">1.86</sampling_interval>
                     </digitization_details>
                     <number_real_images>63</number_real_images>
                     <bits_per_pixel>8.</bits_per_pixel>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>Gatan single-tilt cryoholder</specimen_holder>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <details>The particles were selected using the automatic
          selection       program boxer</details>
            <ctf_correction>
               <details>CTFFIND3 and TRANSFER, IMAGIC 5</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C5</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">9.1</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>IMAGIC-5</name>
                  </software>
               </software_list>
               <number_images_used>16000</number_images_used>
            </final_reconstruction>
            <final_two_d_classification>
               <number_classes>5200</number_classes>
            </final_two_d_classification>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="65537">
      <file>emd_1434.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>256</col>
         <row>256</row>
         <sec>256</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>256</x>
         <y>256</y>
         <z>256</z>
      </spacing>
      <cell>
         <a units="&#8491;">473.6</a>
         <b units="&#8491;">473.6</b>
         <c units="&#8491;">473.6</c>
         <alpha units="deg">90</alpha>
         <beta units="deg">90</beta>
         <gamma units="deg">90</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.0368309</minimum>
         <maximum>0.0538236</maximum>
         <average>0.000232174</average>
         <std>0.00402936</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">1.85</x>
         <y units="&#8491;">1.85</y>
         <z units="&#8491;">1.85</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.0055</level>
            <source>EMDB</source>
         </contour>
      </contour_list>
      <annotation_details>This is a map of the hemocyanin from the
mollusc Nautilus pompilius. Mass correlated threshold: 0.006</annotation_details>
      <details>::::EMDATABANK.org::::EMD-1434::::</details>
   </map>
</emd>