<?xml version='1.0' encoding='utf-8'?>
<emd emdb_id="EMD-14326" version="3.0.2.8" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_2_8/emdb.xsd">
    <admin>
        <current_status>
            <date>2022-10-12</date>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2022-02-10</deposition>
            <header_release>2022-10-12</header_release>
            <map_release>2022-10-12</map_release>
            <update>2022-10-12</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>European Research Council (ERC)</funding_body>
                <code>724349</code>
                <country>European Union</country>
            </grant_reference>
            <grant_reference>
                <funding_body>German Federal Ministry for Education and Research</funding_body>
                <code>031L0100</code>
                <country>Germany</country>
            </grant_reference>
        </grant_support>
        <title>Structure of nuclear pore complex from HEK cells with GP210 knockout</title>
        <authors_list>
            <author>Mosalaganti S</author>
            <author>Obarska-Kosinska A</author>
            <author>Siggel M</author>
            <author>Taniguchi R</author>
            <author>Turonova B</author>
            <author>Zimmerli CE</author>
            <author>Buczak K</author>
            <author>Schmidt FH</author>
            <author>Margiotta E</author>
            <author>Mackmull MT</author>
            <author>Hagen WJH</author>
            <author>Hummer G</author>
            <author>Kosinski J</author>
            <author>Beck M</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author ORCID="0000-0002-5934-687X" order="1">Mosalaganti S</author>
                    <author ORCID="0000-0001-7686-695X" order="2">Obarska-Kosinska A</author>
                    <author ORCID="0000-0003-3393-4988" order="3">Siggel M</author>
                    <author ORCID="0000-0003-3862-8349" order="4">Taniguchi R</author>
                    <author ORCID="0000-0002-5457-4478" order="5">Turonova B</author>
                    <author ORCID="0000-0003-4388-1349" order="6">Zimmerli CE</author>
                    <author order="7">Buczak K</author>
                    <author ORCID="0000-0002-5950-0494" order="8">Schmidt FH</author>
                    <author order="9">Margiotta E</author>
                    <author ORCID="0000-0003-2928-1144" order="10">Mackmull MT</author>
                    <author ORCID="0000-0001-6229-2692" order="11">Hagen WJH</author>
                    <author ORCID="0000-0001-7768-746X" order="12">Hummer G</author>
                    <author ORCID="0000-0002-3641-0322" order="13">Kosinski J</author>
                    <author ORCID="0000-0002-7397-1321" order="14">Beck M</author>
                    <title>AI-based structure prediction empowers integrative structural analysis of human nuclear pores.</title>
                    <journal_abbreviation>Science</journal_abbreviation>
                    <country>US</country>
                    <volume>376</volume>
                    <first_page>eabm9506</first_page>
                    <last_page>eabm9506</last_page>
                    <year>2022</year>
                    <external_references type="PUBMED">35679397</external_references>
                    <external_references type="DOI">doi:10.1126/science.abm9506</external_references>
                    <external_references type="ISSN">1095-9203</external_references>
                    <external_references type="CSD">0038</external_references>
                    <external_references type="ASTM">SCIEAS</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-14326</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>Human nuclear pore complex from HEK cells</name>
        <supramolecule_list>
            <organelle_or_cellular_component_supramolecule supramolecule_id="1">
                <name>Human nuclear pore complex from HEK cells</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>2</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>3</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>4</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>5</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>6</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>7</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>8</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>9</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>10</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>11</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>12</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>13</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>14</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>15</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>16</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>17</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>18</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>19</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>20</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>21</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>22</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>23</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>24</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>25</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>26</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
            </organelle_or_cellular_component_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>subtomogramAveraging</method>
            <aggregation_state>cell</aggregation_state>
            <specimen_preparation_list>
                <subtomogram_averaging_preparation preparation_id="1">
                    <buffer>
                        <ph>7.5</ph>
                    </buffer>
                    <grid>
                        <model>Quantifoil R2/1</model>
                        <support_film film_type_id="1">
                            <film_material>GOLD</film_material>
                            <film_topology>HOLEY</film_topology>
                        </support_film>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE-PROPANE</cryogen_name>
                        <chamber_humidity units="percentage">99</chamber_humidity>
                        <chamber_temperature units="K">300</chamber_temperature>
                        <instrument>LEICA EM GP</instrument>
                    </vitrification>
                </subtomogram_averaging_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <subtomogram_averaging_microscopy microscopy_id="1">
                    <microscope>TFS KRIOS</microscope>
                    <illumination_mode>OTHER</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_defocus_min units="µm">2.0</nominal_defocus_min>
                    <nominal_defocus_max units="µm">3.0</nominal_defocus_max>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN K2 QUANTUM (4k x 4k)</film_or_detector_model>
                            <average_electron_dose_per_image units="e/Å^2">3.15</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </subtomogram_averaging_microscopy>
            </microscopy_list>
            <subtomogram_averaging_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <final_reconstruction>
                    <applied_symmetry>
                        <point_group>C1</point_group>
                    </applied_symmetry>
                    <resolution res_type="BY AUTHOR" units="Å">46.0</resolution>
                    <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
                    <number_subtomograms_used>222</number_subtomograms_used>
                </final_reconstruction>
                <extraction>
                    <number_tomograms>13</number_tomograms>
                    <number_images_used>43</number_images_used>
                    <details>From the 43 intact pores 344 asymmetric units were further extracted and used for processing.</details>
                </extraction>
                <final_angle_assignment>
                    <type>OTHER</type>
                </final_angle_assignment>
            </subtomogram_averaging_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="11944">
        <file>emd_14326.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>144</col>
            <row>144</row>
            <sec>144</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>144</x>
            <y>144</y>
            <z>144</z>
        </spacing>
        <cell>
            <a units="Å">1987.2001</a>
            <b units="Å">1987.2001</b>
            <c units="Å">1987.2001</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.3094612</minimum>
            <maximum>0.40311843</maximum>
            <average>0.0016595279</average>
            <std>0.036508396</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">13.8</x>
            <y units="Å">13.8</y>
            <z units="Å">13.8</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.0648</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-14326::::</label>
        <annotation_details>Human nuclear pore complex from GP210 knockout HEK cells</annotation_details>
    </map>
</emd>