<?xml version='1.0' encoding='utf-8'?>
<emd emdb_id="EMD-14213" version="3.0.2.7" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_2_7/emdb.xsd">
    <admin>
        <current_status>
            <date>2022-04-27</date>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2022-01-31</deposition>
            <header_release>2022-02-23</header_release>
            <map_release>2022-02-23</map_release>
            <update>2022-04-27</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>EIPOD fellowship under Marie Sklodowska-Curie Actions COFUND</funding_body>
                <country>Germany</country>
            </grant_reference>
        </grant_support>
        <title>Cryo-electron tomography of in vitro assembled Bruno and oskar full length RNA condensates</title>
        <authors_list>
            <author>Bose M</author>
            <author>Mahamid J</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Bose M</author>
                    <author order="2">Lampe M</author>
                    <author order="3">Mahamid J</author>
                    <author order="4">Ephrussi A</author>
                    <title>Liquid-to-solid phase transition of oskar ribonucleoprotein granules is essential for their function in Drosophila embryonic development.</title>
                    <journal_abbreviation>Cell</journal_abbreviation>
                    <volume>185</volume>
                    <first_page>1308</first_page>
                    <last_page>1324.e23</last_page>
                    <year>2022</year>
                    <external_references type="PUBMED">35325593</external_references>
                    <external_references type="DOI">doi:10.1016/j.cell.2022.02.022</external_references>
                    <external_references type="ISSN">1097-4172</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-14213</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>Condensates assembled using 10 micro molar Bruno-EGFP with 100 nano molar oskar full length RNA</name>
        <supramolecule_list>
            <complex_supramolecule chimera="true" supramolecule_id="1">
                <name>Condensates assembled using 10 micro molar Bruno-EGFP with 100 nano molar oskar full length RNA</name>
                <parent>0</parent>
                <natural_source database="NCBI">
                    <organism ncbi="7227">Drosophila melanogaster</organism>
                </natural_source>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="7106">Spodoptera</recombinant_organism>
                </recombinant_expression>
            </complex_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>tomography</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <tomography_preparation preparation_id="1">
                    <buffer>
                        <ph>7.5</ph>
                    </buffer>
                    <vitrification>
                        <cryogen_name>ETHANE-PROPANE</cryogen_name>
                    </vitrification>
                    <details>Condensates assembled using 10 micro molar Bruno-EGFP with 100 nano molar oskar full length RNA</details>
                    <sectioning>
                        <other_sectioning>NO SECTIONING</other_sectioning>
                    </sectioning>
                </tomography_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <tomography_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_defocus_min units="µm">3.0</nominal_defocus_min>
                    <nominal_defocus_max units="µm">4.0</nominal_defocus_max>
                    <specialist_optics>
                        <phase_plate>VOLTA PHASE PLATE</phase_plate>
                    </specialist_optics>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN K2 SUMMIT (4k x 4k)</film_or_detector_model>
                            <average_electron_dose_per_image units="e/Å^2">2.1</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </tomography_microscopy>
            </microscopy_list>
            <tomography_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <final_reconstruction>
                    <algorithm>BACK PROJECTION</algorithm>
                    <software_list>
                        <software>
                            <name>IMOD</name>
                        </software>
                    </software_list>
                    <number_images_used>61</number_images_used>
                </final_reconstruction>
            </tomography_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="2672641">
        <file>emd_14213.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>960</col>
            <row>928</row>
            <sec>750</sec>
        </dimensions>
        <origin>
            <col>16</col>
            <row>-16</row>
            <sec>375</sec>
        </origin>
        <spacing>
            <x>960</x>
            <y>928</y>
            <z>750</z>
        </spacing>
        <cell>
            <a units="Å">8169.6</a>
            <b units="Å">7897.2803</b>
            <c units="Å">6382.5</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-18.024527</minimum>
            <maximum>16.022358</maximum>
            <average>0.23239437</average>
            <std>1.8004158</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">8.51</x>
            <y units="Å">8.51</y>
            <z units="Å">8.51</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-14213::::</label>
        <annotation_details>Tomogram of in vitro assembled condensates of Bruno with oskar full length RNA.</annotation_details>
    </map>
    <interpretation>
        <additional_map_list>
            <additional_map format="CCP4" size_kbytes="2672641">
                <file>emd_14213_additional_1.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>960</col>
                    <row>928</row>
                    <sec>750</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>960</x>
                    <y>928</y>
                    <z>750</z>
                </spacing>
                <cell>
                    <a units="Å">8169.6</a>
                    <b units="Å">7897.2803</b>
                    <c units="Å">6382.5</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-9.229577</minimum>
                    <maximum>8.315818</maximum>
                    <average>0.23239435</average>
                    <std>0.5546177</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">8.51</x>
                    <y units="Å">8.51</y>
                    <z units="Å">8.51</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-14213::::</label>
                <annotation_details>Tomogram of in vitro assembled condensates of Bruno with oskar full length RNA. Tomogram was gaussian filtered with a kernel size 3.</annotation_details>
            </additional_map>
        </additional_map_list>
    </interpretation>
</emd>