REL PDBe PDBe PDBe 2007-08-17 2007-08-20 2007-08-20 2011-08-31 Interaction of decay-accelerating factor with coxsackievirus B3. Hafenstein S Hafenstein S Bowman VD Chipman PR Bator Kelly CM Lin F Medof ME Rossmann MG Interaction of decay-accelerating factor with coxsackievirus B3. J.VIROL. 81 12927 12935 2007 17804498 doi:10.1128/JVI.00931-07 2qzd FULLOVERLAP 2qzf FULLOVERLAP 2qzh FULLOVERLAP coxsackievirus B3, RD strain, complexed with decay-accelerating factor coxsackievirus B3, RD strain, complexed with decay-accelerating factor one DAF binds each binding site, one per each protomer 2 7.0 7.0 coxsackievirus B3 passaged through rhabdomysarcoma cells rhabdomyosarcoma cells
virus are saturated with one DAF bound at each possible site
coxsackievirus B3 passaged through rhabdomysarcoma cells rhabdomyosarcoma cells Homo sapiens VERTEBRATES 7.0 7.0 VP1 300 1 VP2 300 1 VP3 300 1 VIRION SEROTYPE false false CVB3-RD decay-accelerating factor Homo sapiens Human 1.0 1.0
each molecule of DAF 70kD; DAF has His6 tag at c-terminus
1 monomer true Komagataella pastoris singleParticle particle 2 6.0
50mM MES
quantifoils
 ETHANE 120 HOMEMADE PLUNGER
Vitrification instrument: plunger
blot before plunging FEI/PHILIPS CM300FEG/T FLOOD BEAM BRIGHT FIELD TUNGSTEN HAIRPIN 300 2.0 1.0 4.6 45000.0 47000.0 GATAN LIQUID NITROGEN 83 83 93 lens astigmatism was corrected at 98,000 times mag 2004-08-06 KODAK SO-163 FILM ZEISS SCAI 7 44 24
scanned at 7 microns and bin averaged to 14
1.0 8. side mounted nitrogen cooled 0
Virion were incubated with DAF at ratio of 4 DAF molecules per every potential binding site.
robEM
 I OTHER 14.0 FSC 0.5 CUT-OFF EMPFT, EM3DR 2269 emd_1412.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 181 181 181 -90 -90 -90 181 181 181 528.52 528.52 528.52 90 90 90 Y X Z -1.412 1.9499 -0.243779 0.366685 2.92 2.92 2.92 0.762 Surface rendered cvb3 complexed with DAF. Calculated map was used to scaled complexmap to 2.92 for fitting of DAF into the cryoEM density.
::::EMDATABANK.org::::EMD-1412::::