2024-07-17 REL PDBe PDBe PDBe 2021-12-24 2023-03-29 2023-03-29 2024-07-17 Wellcome Trust United Kingdom Portal protein assembly of the phicrAss001 virion with C12 symmetry imposed Bayfield OW Shkoporov AN Yutin N Khokhlova EV Smith JLR Hawkins DEDP Koonin EV Hill C Antson AA crAssphage, bacteriophage, virus, DNA virus, portal, connector Bayfield OW Shkoporov AN Yutin N Khokhlova EV Smith JLR Hawkins DEDP Koonin EV Hill C Antson AA Structural atlas of a human gut crassvirus. Nature UK 617 409 416 2023 37138077 doi:10.1038/s41586-023-06019-2 1476-4687 0006 NATUAS Antson A Bayfield O Shkoporov A Yutin N Khokhlova E Smith J Hawkins D Koonin E Hill C Structural atlas of the most abundant human gut virus Res Sq US 2023 doi:10.21203/rs.3.rs-1898492/v1 2693-5015 7qog FULLOVERLAP Bacteroides phage crAss001 Bacteroides phage crAss001 0 1 2 3 4 Bacteroides phage crAss001 VIRION SPECIES false false Portal protein gp20 Bacteroides phage crAss001 0.093122211 1 LEVO MADFLNFPRQMLPFSKKTKQWRKDCLLWANQKTFFNYSLVRKSVIHKKINYDLLNGRLHMSDLELVLNPDGIKAAYIPDR LQHYPIMNSKLNVLRGEESKRVFDFKVVVTNPNAISEIEDNKKNELLQRLQEMITDTSISEDEYNIKLEKLNDYYTYEWQ DIREVRANELLNHYIKEYDIPLIFNNGFMDAMTCGEEIYQCDIVGGEPVIERVNPLKIRIFKSGYSNKVEDADMIILEDY WSPGRVIDTYYDVLSPKDIKYIETMPDYIGQGAVDQMDNIDERYGFVNQNMIGDEITVRDGTYFFDPANLFTEGIANSLL PYDLAGNLRVLRLYWKSKRKILKVKSYDPETGEEEWNFYPENYVVNKEAGEEVQSFWVNEAWEGTMIGNEIFVNMRPRLI QYNRLNNPSRCHFGIVGSIYNLNDSRPFSLVDMMKPYNYLYDAIHDRLNKAIASNWGSILELDLSKVPKGWDVGKWMYYA RVNHIAVIDSFKEGTIGASTGKLAGALNNAGKGMIETNIGNYIQQQINLLEFIKMEMADVAGISKQREGQISQRETVGGV ERATLQSSHITEWLFTIHDDVKKRALECFLETAKVALKGRNKKFQYILSDTSTRVMEIDGDEFAEADYGLVVDNSNGTQE LQQKLDTLAQAALQTQTLSFSTITKLYTSSSLAEKQRLIEKDEKQIRERQAQAQKEQLEAQQQIAAMQQQQKEAELLQKE EANIRDNQTKIIIAQIQSEGGPDEEDGIMIDDYSPEAKANLAEKIREFDEKLKLDKDKLKLDKKKAETDASIKRQALRKK SSTTNK A0A385DT68 Ring protein 1 gp43 Bacteroides phage crAss001 0.027479624999999997 1 LEVO MVNNINWVKLPVILDRLLRHPLLTDLNLETAIQYTLDFISAMGLPNVYVDKIETIDIKEYRGELPCDLISINQVRLHKNG IALRAMTDNFNAYPTHDHKEGDWYERGEPSFKTQGRVIFTSIKHEKVDISYKAIMLDDEGLPLIPDNPIFLKTLELYIKK EWFTILFDMGKISPAVLNNTQQEYAFKAGQCNNEFVIPSVSEMEAITNMWNQLIPRVTEFRRGFKNLGDKEYIRVH A0A385DT91 Ring protein 2 gp40 Bacteroides phage crAss001 0.026216832 1 LEVO MTYNELIYMVLDELKLSSDDSYYTPDHVIFLLVKYRSFLLKQRYSDIKKQIPDSDYQSICLDLIEVPAISGEPCEGSSYL RSKNKVPTTMMIGNPRVYPMDFYQGEITYISRDRMRYVGYNKFLRNIIYCSKAPDGYLYFKSWNPQFLHLEKVSFNAIFE DAKEASEMACPEENGTICKLEDKEFPIEDALVPPLIELVVKELRGPEYSPKDEDNNAKDDLPDAR A0A385DT87 Cargo protein 1 gp45 Bacteroides phage crAss001 0.090913836 2 LEVO MAKKKIKRRGKMPPNIFDTGGQSWGQQSSGQFSNAFKGENLGNSIGSIGGAVGGIAQAGISNAQIADTSGIEAQNKAQKN MVVGASSNDDLMSEWGSWNKVKDDYSWKDVRGGSTGQRVTNTIGAAGQGAAAGASVGGPIGAIVGGVVGLGSAIGGWLGG NRKAKRKAKKLNKEAKEANERALTSFETRADNIDTQNDFNMLANFSAYGGPLEFGSGAIGYEFDNRYLNNQEMSAVAKQR LTSLPNSFQALPEMNTYNAFAEGGGLSREKNYGSKKKPYPSVPSGDFAGPHRSYPIPTKADARDALRLAGLHGNESVRRK VLAKYPSLKAFGGSLFDSVVGNNFNQSFTQGIQGMFQQEPEQTVQAANIAKDGGDIKIKEKNKGKFTAYCGGKVTEACIR KGKNSSNPTTRKRATFAQNARNWNAFGGWLNTQGGDFTNGVTFINEGGSHEENPYQGIQIGVDPEGAPNLVEQGEVVYDD YVFSDRMEIPDDIRKEYKLRGKTFAKAAKSAQRESEERPNDPLSTKGLQAAMERIATAQEEARQRKEAHREGNEYPSMFA YGGDTNPYGLALEDPMSVEELEALMVQSGETGEIAPEGNNGNRQTWTRYAPIIGSGLASLSDLFSKPDYDSADLISGVDL GAEAVGYAPIGNYLSYRPLDRDFYINKMNQQAAATRRGLMNTSGGNRLNAQAGILAADYNYGQNMGNLARQAEEYNQQLR ERVEAFNRGTNMFNTETGLKASMFNAESRNAAKRARLGQATTVAQLRQGIKDQDAARRSANITNFLQGLGDMGWENEQAN WLDTLAKSGVLKMNTKGEYTGGTKKAKGGKVRTKKKKGLTYG A0A385DV85 singleParticle particle 7.5 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.3 1.5 FEI FALCON III (4k x 4k) INTEGRATING 51.0 1 C12 3.09 FSC 0.143 CUT-OFF RELION 3.1 122709 OTHER OTHER RELION 3.1 emd_14089.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 286 286 286 0 0 0 286 286 286 398.71204 398.71204 398.71204 90.0 90.0 90.0 X Y Z -0.754473 1.1770815 0.0042607314 0.038875245 1.394098 1.394098 1.394098 0.07 AUTHOR AB INITIO MODEL REAL 172.0 emd_14089_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 286 286 286 0 0 0 286 286 286 398.71204 398.71204 398.71204 90.0 90.0 90.0 X Y Z -0.19886605 0.2968499 0.0003982023 0.012801801 1.394098 1.394098 1.394098 AUTHOR emd_14089_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 286 286 286 0 0 0 286 286 286 398.71204 398.71204 398.71204 90.0 90.0 90.0 X Y Z -0.28309616 0.3076948 0.0027417527 0.017200733 1.394098 1.394098 1.394098 AUTHOR