2024-11-06 REL PDBe PDBe PDBe 2021-11-27 2022-05-25 2022-05-25 2024-11-06 Spanish Ministry of Science, Innovation, and Universities PID2019-104757RB-I00 Spain Spanish Ministry of Science, Innovation, and Universities RTI2018-094399-A-I00 Spain Spanish Ministry of Science, Innovation, and Universities Grant SEV 2017-0712 Spain H2020 Marie Curie Actions of the European Commission MSCA IF 2020, Proposal: 101024130 Spain European Research Council (ERC) HighResCells, ERC - 2018 - SyG, Proposal: 810057 Spain Spanish National Research Council CSIC PTI Salud Global Proposal: 202080E110 Spain European Research Council (ERC) ERC CoG 101001038 Spain Spanish Ministry of Science, Innovation, and Universities SEJI/2019/011 Spain SARS-CoV-2 S protein S:D614G mutant 1-up Ginex T Marco-Marin C SARS-CoV-2, S protein, S:D614G mutant, VIRAL PROTEIN Ginex T Marco-Marin C Wieczor M Mata CP Krieger J Ruiz-Rodriguez P Lopez-Redondo ML Frances-Gomez C Melero R Sanchez-Sorzano CO Martinez M Gougeard N Forcada-Nadal A Zamora-Caballero S Gozalbo-Rovira R Sanz-Frasquet C Arranz R Bravo J Rubio V Marina A Geller R Comas I Gil C Coscolla M Orozco M Llacer JL Carazo JM The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutation. Plos Pathog. US 18 e1010631 e1010631 2022 35816514 doi:10.1371/journal.ppat.1010631 1553-7374 7qdh FULLOVERLAP SARS-CoV-2 S protein S:D614G mutant SARS-CoV-2 S protein S:D614G mutant 0 1 Severe acute respiratory syndrome-related coronavirus 0.34 Spike glycoprotein,Fibritin Escherichia virus T4 0.138902688 3 Spodoptera frugiperda LEVO CVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFAS TEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQP FLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDS SSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITN LCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQ TGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQS YGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTD AVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAE HVNNSYECDIPIGAGICASYQTQTNSPASVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVD CTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSF IEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIP FAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVL NDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAP HGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTV YDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPLVPR GSGYIPEAPRDGQAYVRKDGEWVFLSTFLSPHHHHHHHHHEQKLISEEDL P0DTC2 P10104 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 24 NAG singleParticle particle 0.7 7.2 10.0 Hepes Hepes pH7.2 150.0 NaCl sodium chloride Quantifoil R1.2/1.3 COPPER 300 GLOW DISCHARGE ETHANE 95 283 LEICA EM GP FEI TALOS ARCTICA FLOOD BEAM OTHER FIELD EMISSION GUN 200 0.3 3.5 120000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN FEI FALCON III (4k x 4k) COUNTING 1 2492 20.0 32.4 1 268763
Initial model generation
 C1 FOURIER SPACE 4.2 FSC 0.143 CUT-OFF cryoSPARC 82102 MAXIMUM LIKELIHOOD cryoSPARC MAXIMUM LIKELIHOOD cryoSPARC RELION Scipion emd_13919.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 -150 -150 -150 300 300 300 420.0 420.0 420.0 90.0 90.0 90.0 X Y Z -0.0016482698 1.5133927 0.00095763133 0.019435013 1.4 1.4 1.4 0.057 AUTHOR SARS-CoV-2 S protein S:D614G mutant 1-up OTHER RECIPROCAL emd_13919_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 -150 -150 -150 300 300 300 420.0 420.0 420.0 90.0 90.0 90.0 X Y Z -0.35786897 1.5007837 -0.0015187401 0.044994183 1.4 1.4 1.4 AUTHOR SARS-CoV-2 S protein S:D614G mutant 1-up unsharpened map emd_13919_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 -150 -150 -150 300 300 300 420.0 420.0 420.0 90.0 90.0 90.0 X Y Z -0.40328696 1.6863911 0.00060545985 0.050242435 1.4 1.4 1.4 AUTHOR SARS-CoV-2 S protein S:D614G mutant 1-up half map 2 emd_13919_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 -150 -150 -150 300 300 300 420.0 420.0 420.0 90.0 90.0 90.0 X Y Z -0.4739164 1.6405609 0.0005195889 0.05034156 1.4 1.4 1.4 AUTHOR SARS-CoV-2 S protein S:D614G mutant 1-up half map 1