2024-10-23 REL PDBe PDBe PDBe 2021-10-28 2022-03-16 2022-03-16 2024-10-23 Swedish Research Council 2016-03999 Singapore Swedish Research Council 2020-04936 Singapore Knut and Alice Wallenberg Foundation 2018.0042 Singapore Ministry of Education (MoE, Singapore) MOH-000382-00 Singapore Cryo-EM of the complex between human uromodulin (UMOD)/Tamm-Horsfall protein (THP) and the FimH lectin domain from uropathogenic E. coli Jovine L Xu C EGF DOMAIN, DECOY MODULE, BETA-HAIRPIN, D10C DOMAIN, D8C DOMAIN, EXTRACELLULAR MATRIX, GLYCOPROTEIN, N-GLYCAN, HIGH-MANNOSE SUGAR, CELL ADHESION, ANTIMICROBIAL PROTEIN, BACTERIAL ADHESIN, TYPE I PILUS, SUGAR BINDING PROTEIN, LECTIN, URINARY TRACT INFECTION, UTI, UROPATHOGENIC E. COLI, UPEC Stsiapanava A Xu C Nishio S Han L Yamakawa N Carroni M Tunyasuvunakool K Jumper J de Sanctis D Wu B Jovine L Structure of the decoy module of human glycoprotein 2 and uromodulin and its interaction with bacterial adhesin FimH. Nat.Struct.Mol.Biol. US 29 190 193 2022 35273390 doi:10.1038/s41594-022-00729-3 1545-9985 Tamm I Horsfall FL Characterization and separation of an inhibitor of viral hemagglutination present in urine. Proc Soc Exp Biol Med 74 106 108 1950 15430405 0037-9727 Pennica D Kohr WJ Kuang WJ Glaister D Aggarwal BB Chen EY Goeddel DV Identification of human uromodulin as the Tamm-Horsfall urinary glycoprotein. Science US 236 83 88 1987 3453112 doi:10.1126/science.3453112 0036-8075 0038 SCIEAS Pak J Pu Y Zhang ZT Hasty DL Wu XR Tamm-Horsfall protein binds to type 1 fimbriated Escherichia coli and prevents E. coli from binding to uroplakin Ia and Ib receptors. J Biol Chem US 276 9924 9930 2001 11134021 doi:10.1074/jbc.M008610200 0021-9258 0071 JBCHA3 Serafini-Cessi F Malagolini N Cavallone D Tamm-Horsfall glycoprotein: biology and clinical relevance. Am J Kidney Dis 42 658 676 2003 14520616 doi:10.1016/s0272-6386(03)00829-1 1523-6838 Yang H Wu C Zhao S Guo J Identification and characterization of D8C, a novel domain present in liver-specific LZP, uromodulin and glycoprotein 2, mutated in familial juvenile hyperuricaemic nephropathy. FEBS Lett NE 578 236 238 2004 15589826 doi:10.1016/j.febslet.2004.10.092 0014-5793 0165 FEBLAL Kalas V Pinkner JS Hannan TJ Hibbing ME Dodson KW Holehouse AS Zhang H Tolia NH Gross ML Pappu RV Janetka J Hultgren SJ Evolutionary fine-tuning of conformational ensembles in FimH during host-pathogen interactions. Sci Adv US 3 e1601944 2017 28246638 doi:10.1126/sciadv.1601944 2375-2548 Sauer MM Jakob RP Luber T Canonica F Navarra G Ernst B Unverzagt C Maier T Glockshuber R Binding of the Bacterial Adhesin FimH to Its Natural, Multivalent High-Mannose Type Glycan Targets. J Am Chem Soc US 141 936 944 2019 30543411 doi:10.1021/jacs.8b10736 1520-5126 JACSAT Weiss GL Stanisich JJ Sauer MM Lin CW Eras J Zyla DS Truck J Devuyst O Aebi M Pilhofer M Glockshuber R Architecture and function of human uromodulin filaments in urinary tract infections. Science US 369 1005 1010 2020 32616672 doi:10.1126/science.aaz9866 1095-9203 0038 SCIEAS Stsiapanava A Xu C Brunati M Zamora-Caballero S Schaeffer C Bokhove M Han L Hebert H Carroni M Yasumasu S Rampoldi L Wu B Jovine L Cryo-EM structure of native human uromodulin, a zona pellucida module polymer. EMBO J UK 39 e106807 2020 33196145 doi:10.15252/embj.2020106807 1460-2075 0897 EMJODG Jumper J Evans R Pritzel A Green T Figurnov M Ronneberger O Tunyasuvunakool K Bates R Zidek A Potapenko A Bridgland A Meyer C Kohl SAA Ballard AJ Cowie A Romera-Paredes B Nikolov S Jain R Adler J Back T Petersen S Reiman D Clancy E Zielinski M Steinegger M Pacholska M Berghammer T Bodenstein S Silver D Vinyals O Senior AW Kavukcuoglu K Kohli P Hassabis D Highly accurate protein structure prediction with AlphaFold. Nature UK 596 583 589 2021 34265844 doi:10.1073/pnas.2021785118 1476-4687 0006 NATUAS EMD-13378 other EM volume
Full-length cryo-EM structure of the native human uromodulin (UMOD)/Tamm-Horsfall protein (THP) filament
 EMD-10553 other EM volume
Cryo-EM of native human uromodulin (UMOD)/Tamm-Horsfall protein (THP) filament
 7q3n FULLOVERLAP Complex of human uromodulin (UMOD)/Tamm-Horsfall protein (THP) and the lectin domain of the FimH adhesin of uropathogenic E. coli Complex of human uromodulin (UMOD)/Tamm-Horsfall protein (THP) and the lectin domain of the FimH adhesin of uropathogenic E. coli 0 1 2 Uromodulin 1 1 Homo sapiens Type 1 fimbiral adhesin FimH 1 2 Escherichia coli (strain UTI89 / UPEC) Uromodulin Homo sapiens 0.061498816 1 LEVO DTSEARWCSECHSNATCTEDEAVTTCTCQEGFTGDGLTCVDLDECAIPGAHNCSANSSCVNTPGSFSCVCPEGFRLSPGL GCTDVDECAEPGLSHCHALATCVNVVGSYLCVCPAGYRGDGWHCECSPGSCGPGLDCVPEGDALVCADPCQAHRTLDEYW RSTEYGEGYACDTDLRGWYRFVGQGGARMAETCVPVLRCNTAAPMWLNGTHPSSDEGIVSRKACAHWSGHCCLWDASVQV KACAGGYYVYNLTAPPECHLAYCTDPSSVEGTCEECSIDEDCKSNNGRWHCQCKQDFNITDISLLEHRLECGANDMKVSL GKCQLKSLGFDKVFMYLSDSRCSGFNDRDNRDWVSVVTPARDGPCGTVLTRNETHATYSNTLYLADEIIIRDLNIKINFA CSYPLDMKVSLKTALQPMVSALNIRVGGTGMFTVRMALFQTPSYTQPYQGSSVTLSTEAFLYVGTMLDGGDLSRFALLMT NCYATPSSNATDPLKYFIIQDRCPHTRDSTIQVVENGESSQGRFSVQMFRFAGNYDLVYLHCEVYLCDTMNEKCKPTCSG TRF P07911 Type 1 fimbiral adhesin FimH Escherichia coli (strain UTI89 / UPEC) 0.018669687999999997 1 Escherichia coli LEVO FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGAAYGGVLSSFSGTVKYNGS SYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPTGS HHWGHHHHHHHH Q1R2J4 singleParticle filament 1.8 7.0 10.0 C8H17N2NaO4S Na-HEPES Quantifoil R2/2 COPPER 300 CARBON HOLEY GLOW DISCHARGE AIR ETHANE 294 FEI VITROBOT MARK IV TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GIF Bioquantum 20 GATAN K3 BIOQUANTUM (6k x 4k) 13616 1.7 40.0 1 3767790 6TQK
Cryo-EM structure of the filament core of native human uromodulin (UMOD)/Tamm-Horsfall protein (THP).
 1 7.4 FSC 0.143 CUT-OFF RELION 3.08 225819 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD 3 RELION 3.08
483997 helical segments were used during final 3D classification.
 emd_13794.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 336.0 336.0 336.0 90.0 90.0 90.0 X Y Z -0.0062941606 0.01860563 0.000026052234 0.00019823122 0.84 0.84 0.84 0.001 AUTHOR Unprocessed cryo-EM map of the lectin domain of fimbrial adhesin FimH from uropathogenic Escherichia coli bound to the branch of native human uromodulin (UMOD)/Tamm-Horsfall protein (THP). 7PFP C 25-316 PDB experimental model 6GTW A 1-158 PDB experimental model 6GTW F 1-2 PDB experimental model RIGID BODY FIT REAL 396.230000000000018 emd_13794_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 336.0 336.0 336.0 90.0 90.0 90.0 X Y Z -0.031774335 0.06591791 0.000054210625 0.00066856603 0.84 0.84 0.84 AUTHOR Bound FimH lectin domain density merged with UMOD branch density. emd_13794_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 336.0 336.0 336.0 90.0 90.0 90.0 X Y Z -0.0073200306 0.019314846 0.000023617904 0.00039994312 0.84 0.84 0.84 AUTHOR Cryo-EM half map 2 of the lectin domain of fimbrial adhesin FimH from uropathogenic Escherichia coli bound to the branch of native human uromodulin (UMOD)/Tamm-Horsfall protein (THP). emd_13794_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 336.0 336.0 336.0 90.0 90.0 90.0 X Y Z -0.0072862073 0.01956621 0.000026815374 0.0004024854 0.84 0.84 0.84 AUTHOR Cryo-EM half map 1 of the lectin domain of fimbrial adhesin FimH from uropathogenic Escherichia coli bound to the branch of native human uromodulin (UMOD)/Tamm-Horsfall protein (THP).