2024-07-17 REL PDBe PDBe PDBe 2021-10-21 2022-06-22 2022-06-22 2024-07-17 Wellcome Trust 098302 United Kingdom Wellcome Trust 217089 United Kingdom Wellcome Trust 202679/Z/16/Z United Kingdom Wellcome Trust 206166/Z/17/Z United Kingdom IMC-Arches-Stalk C1 at 6.18A - Refinement of the IMC, Arches and Stalk complex without symmetry from the fully-assembled R388 type IV secretion system. Mace K Vadakkepat AK type IV secretion system, type 4 secretion system, T4SS, IMC, inner membrane complex, inner membrane, arches, stalk, periplasmic, R388 plasmid, conjugation, bacterial secretion, secretion, secretion system, protein complex, VirB3, VirB4, VirB5, VirB6, VirB8, TrwM, TrwK, TrwJ, TrwI, TrwG, MEMBRANE PROTEIN Mace K Vadakkepat AK Redzej A Lukoyanova N Oomen C Braun N Ukleja M Lu F Costa TRD Orlova EV Baker D Cong Q Waksman G Cryo-EM structure of a type IV secretion system. Nature UK 607 191 196 2022 35732732 doi:10.1038/s41586-022-04859-y 1476-4687 0006 NATUAS EMD-12933 other EM volume EMD-12709 other EM volume 7q1v FULLOVERLAP Type IV secretion system complex Type IV secretion system complex 0 1 Escherichia coli R388 plasmid 2.808 TrwG protein Escherichia coli 0.025799993999999996 3 Escherichia coli LEVO MSKKQPKPVKAEQLKSYYEESRGLERDLIGEFVKSRKTAWRVATASGLFGLLGMVCGIVGFSQPAPAPLVLRVDNATGAV DVVTTLREHESSYGEVVDTYWLNQYVLNREAYDYNTIQMNYDTTALLSAPAVQQDYYKLFDGSNARDRVLGNKARITVRV RSIQPNGRGQATVRFTTQQHNSNGTVEAPQHQIATIGYTYIGAPMRSSDRLLNPLGFQVTSYRADPEILNN O50335 singleParticle particle 7.6 ETHANE FEI TITAN KRIOS OTHER OTHER FIELD EMISSION GUN 300 GATAN K3 (6k x 4k) 57.5 1
CryoSPARC ab-initio
 6.18 FSC 0.143 CUT-OFF cryoSPARC 566815 MAXIMUM LIKELIHOOD OTHER
Stochastic gradient descent (SGD)
 emd_13767.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 546.304 546.304 546.304 90.0 90.0 90.0 X Y Z -0.19870856 0.38187966 0.002284417 0.0104121715 1.067 1.067 1.067 0.05 AUTHOR IMC-Arches-Stalk C1 6.18A sharpened - Refinement of the Inner Membrane Complex (IMC), Arches and Stalk without symmetry. emd_13767_msk_1.map emd_13767_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 546.304 546.304 546.304 90.0 90.0 90.0 X Y Z -0.04939003 0.15540983 0.00228441 0.008822941 1.067 1.067 1.067 AUTHOR IMC-Arches-Stalk C1 6.18A unsharpened - Refinement of the Inner Membrane Complex (IMC), Arches and Stalk without symmetry. emd_13767_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 546.304 546.304 546.304 90.0 90.0 90.0 X Y Z -0.14024115 0.20157187 0.0011736515 0.018770797 1.067 1.067 1.067 AUTHOR IMC-Arches-Stalk C1 6.18A - Half-B emd_13767_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 546.304 546.304 546.304 90.0 90.0 90.0 X Y Z -0.1308671 0.20838566 0.0011698223 0.018770061 1.067 1.067 1.067 AUTHOR IMC-Arches-Stalk C1 6.18A - Half-A