2023-12-13 REL PDBe PDBe PDBe 2021-10-04 2021-11-24 2021-11-24 2023-12-13 European Research Council (ERC) 339880 European Union Netherlands Organisation for Scientific Research (NWO) 024002002 European Union European Research Council (ERC) 669371 European Union Netherlands Organisation for Scientific Research (NWO) 192.001 European Union European Research Council (ERC) 803894 European Union Sub-tomogram average of Ca. M.lanthanidiphila S-layer obtained from whole cell cryo-tomograms Gambelli L Mesman R S-layer, STRUCTURAL PROTEIN Gambelli L Mesman R Versantvoort W Diebolder CA Engel A Evers W Jetten MSM Pabst M Daum B van Niftrik L The Polygonal Cell Shape and Surface Protein Layer of Anaerobic Methane-Oxidizing Methylomirabilis lanthanidiphila Bacteria. Front Microbiol CH 12 766527 766527 2021 34925275 doi:10.3389/fmicb.2021.766527 1664-302X EMD-13670 other EM volume
Average obtained from isolated s-layer
 S-layer of Ca.M.lanthanidiphila S-layer of Ca.M.lanthanidiphila 0
3ml Ca. M.lanthanidiphila floculant biomass was dispersed using a ball bearing homogenizer with 8um clearance.
Candidatus Methylomirabilis lanthanidiphila on top of outer membrane 0.0316 subtomogramAveraging cell 7.0 Quantifoil R2/2 COPPER 200 GLOW DISCHARGE AIR 20.0 ETHANE 100 293 FEI VITROBOT MARK IV
2 microlitre sample was mixed with 0.5 microlitre 10 nm ProteinA gold solution Grids were plunge frozen in liquid ethane, blot force 1, blot time 3 sec..
Dispersed cells from floculant biomass
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 50.0 2.7 4.0 4.13 5.0 4.68 33000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN 93.0 GIF Bioquantum 20 GATAN K3 BIOQUANTUM (6k x 4k) 4092 5760 1 0.3835 1.63 1 1 C6 BACK PROJECTION 25.0 OTHER PEET 1.14.0
resolution obtained from FFT of obtainded average
1330 3 6000 averaged from hand picked particles random grid PEET 1.14.0
Used binnend tomograms. Excized sub-volumes of the S-layer with the slicer tool, applied a grid model and saved the grid model after projection on the whole tomogram.
 NOT APPLICABLE emd_13672.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 29 31 89 17 18 0 29 31 89 229.68001 245.52 704.88 90.0 90.0 90.0 X Y Z 47.478879999999997 70.432130000000001 60.750492000000001 1.519258 7.92 7.92 7.92 61.700000000000003 AUTHOR Sub-tomogram average of the S-layer of Ca. M.lanthanidiphila obtained from whole cell cryo-tomograms