<?xml version='1.0' encoding='utf-8'?>
<emd emdb_id="EMD-13597" version="3.0.2.7" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_2_7/emdb.xsd">
    <admin>
        <current_status>
            <date>2022-03-02</date>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2021-09-18</deposition>
            <header_release>2022-01-26</header_release>
            <map_release>2022-01-26</map_release>
            <update>2022-03-02</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>Not funded</funding_body>
            </grant_reference>
        </grant_support>
        <title>Cryo EM map of bison NHA2 in detergent structure</title>
        <authors_list>
            <author>Matsuoka R</author>
            <author>Fudim R</author>
            <author>Jung S</author>
            <author>Drew D</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Matsuoka R</author>
                    <author ORCID="0000-0001-5101-3184" order="2">Fudim R</author>
                    <author ORCID="0000-0002-4730-5245" order="3">Jung S</author>
                    <author order="4">Zhang C</author>
                    <author ORCID="0000-0002-2419-3519" order="5">Bazzone A</author>
                    <author order="6">Chatzikyriakidou Y</author>
                    <author ORCID="0000-0001-7829-5505" order="7">Robinson CV</author>
                    <author ORCID="0000-0002-6330-2239" order="8">Nomura N</author>
                    <author ORCID="0000-0003-1735-2937" order="9">Iwata S</author>
                    <author ORCID="0000-0002-7958-4074" order="10">Landreh M</author>
                    <author order="11">Orellana L</author>
                    <author ORCID="0000-0003-1340-0831" order="12">Beckstein O</author>
                    <author ORCID="0000-0001-8866-6349" order="13">Drew D</author>
                    <title>Structure, mechanism and lipid-mediated remodeling of the mammalian Na + /H + exchanger NHA2.</title>
                    <journal_abbreviation>Nat.Struct.Mol.Biol.</journal_abbreviation>
                    <country>US</country>
                    <volume>29</volume>
                    <first_page>108</first_page>
                    <last_page>120</last_page>
                    <year>2022</year>
                    <external_references type="PUBMED">35173351</external_references>
                    <external_references type="DOI">doi:10.1038/s41594-022-00738-2</external_references>
                    <external_references type="ISSN">1545-9985</external_references>
                </journal_citation>
            </primary_citation>
            <secondary_citation>
                <journal_citation published="true">
                    <author order="14">Matsuoka R</author>
                    <author order="15">Fudim F</author>
                    <author order="16">Jung S</author>
                    <author order="17">Drew F</author>
                    <title>Structure, mechanism and lipid-mediated remodeling of the mammalian Na+/H+ exchanger NHA2</title>
                    <journal_abbreviation>Nat.Struct.Mol.Biol.</journal_abbreviation>
                    <country>US</country>
                    <year>2022</year>
                    <external_references type="DOI">doi:10.1038/s41594-021-00717-z</external_references>
                    <external_references type="ISSN">1545-9985</external_references>
                </journal_citation>
            </secondary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-13597</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>mitochondrial sodium/hydrogen exchanger 9B2</name>
        <supramolecule_list>
            <organelle_or_cellular_component_supramolecule supramolecule_id="1">
                <name>mitochondrial sodium/hydrogen exchanger 9B2</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <natural_source database="NCBI">
                    <organism ncbi="9901">Bison bison</organism>
                </natural_source>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="4932">Saccharomyces cerevisiae</recombinant_organism>
                </recombinant_expression>
            </organelle_or_cellular_component_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name>mitochondrial sodium/hydrogen exchanger 9B2</name>
                <natural_source database="NCBI">
                    <organism ncbi="9901">Bison bison</organism>
                </natural_source>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="4932">Saccharomyces cerevisiae</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MRNQDKRAAHKDSEPSTEVNHTASSYQGRQQETGMNLRGIDGNEPTEGSNLLNNNEKMQGTPAEPNHLQRRRQIHACPPR
GLLARVITNVTMVILLWAVVWSVTGSECLPGGNLFGIIMLFYCAIIGGKLFGLIKLPTLPPLPPLLGMLLAGFLIRNVPV
ISDNIQIKHKWSSALRSIALSVILVRAGLGLDSNALKKLKGVCVRLSLGPCLIEACTSAVLAYFLMGLPWQWGFMLGFVL
GAVSPAVVVPSMLLLQEGGYGVEKGIPTLLMAAGSFDDILAITGFNTCLGMAFSTGSTVFNVLKGVLEVIIGVVTGLVLG
FFIQYFPSSDQDNLVWKRAFLVLGLSVLAVFSSTYFGFPGSGGLCTLVTAFLAGRGWASTKTDVEKVIAVAWDIFQPLLF
GLIGAEVLITALRPETIGLCVATLGIAVLIRILVTYLMVCFAGFNIKEKIFISFAWLPKATVQAAIGSVALDTARSHGEK
QLEGYGMDVLTVAFLSIIITAPVGSLLIGLLGPRLLQKAEQNKDEEDQGETSIQV</string>
                </sequence>
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <concentration units="mg/mL">5</concentration>
                    <buffer>
                        <ph>8.0</ph>
                        <component>
                            <concentration units="mM">100.0</concentration>
                            <formula>NaCl</formula>
                            <name>sodium chloride</name>
                        </component>
                        <component>
                            <concentration units="mM">50.0</concentration>
                            <formula>Tris-HC</formula>
                            <name>Tris hydroxy chloride</name>
                        </component>
                        <component>
                            <concentration units="%">0.001</concentration>
                            <formula>LMNG</formula>
                            <name>Lauryl Maltose Neopentyl Glycol</name>
                        </component>
                    </buffer>
                    <grid>
                        <model>Quantifoil R2/1</model>
                        <material>COPPER</material>
                        <mesh>300</mesh>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN K2 QUANTUM (4k x 4k)</film_or_detector_model>
                            <detector_mode>COUNTING</detector_mode>
                            <digitization_details>
                                <dimensions>
                                    <width units="pixel">3838</width>
                                    <height units="pixel">3710</height>
                                </dimensions>
                            </digitization_details>
                            <average_electron_dose_per_image units="e/Å^2">80.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <ctf_correction>
                    <software_list>
                        <software>
                            <name>CTFFIND</name>
                            <version>4.13</version>
                        </software>
                    </software_list>
                </ctf_correction>
                <startup_model type_of_model="PDB ENTRY">
                    <pdb_model>
                        <pdb_id>4CZ9</pdb_id>
                    </pdb_model>
                </startup_model>
                <final_reconstruction>
                    <applied_symmetry>
                        <point_group>C1</point_group>
                    </applied_symmetry>
                    <algorithm>FOURIER SPACE</algorithm>
                    <resolution res_type="BY AUTHOR" units="Å">3.04</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>3.0</version>
                        </software>
                    </software_list>
                    <number_images_used>219151</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>3,0</version>
                        </software>
                    </software_list>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>3.0</version>
                        </software>
                    </software_list>
                </final_angle_assignment>
                <final_three_d_classification>
                    <number_classes>219151</number_classes>
                </final_three_d_classification>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
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        <file>emd_13597.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
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            <col>240</col>
            <row>240</row>
            <sec>240</sec>
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            <minimum>-0.07286787</minimum>
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        <label>::::EMDATABANK.org::::EMD-13597::::</label>
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    <interpretation>
        <segmentation_list>
            <segmentation>
                <file>emd_13597_msk_1.map</file>
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        <half_map_list>
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                <label>::::EMDATABANK.org::::EMD-13597::::</label>
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