2024-11-13
REL
PDBe
PDBe
PDBe
2021-09-17
2021-11-24
2021-11-24
2024-11-13
Biotechnology and Biological Sciences Research Council (BBSRC)
BB/M000265/1
United Kingdom
European Research Council (ERC)
845126
United Kingdom
Wellcome Trust
209407/Z/17/Z
United Kingdom
Cryo-EM structure of the dimeric Rhodobacter sphaeroides RC-LH1 core complex at 2.9 A: the structural basis for dimerisation
Qian P
Hunter CN
light harvesting complex, photosynthesis, Cryo-EM, purple bacteria, RC-LH1, RC-LH1-PufXYZ, dimer, dimeric core complex
Qian P
Croll TI
Hitchcock A
Jackson PJ
Salisbury JH
Castro-Hartmann P
Sader K
Swainsbury DJK
Hunter CN
Cryo-EM structure of the dimeric Rhodobacter sphaeroides RC-LH1 core complex at 2.9 angstrom : the structural basis for dimerisation.
Biochem.J.
UK
478
3923
3937
2021
34622934
doi:10.1042/BCJ20210696
1470-8728
0043
BIJOAK
Qian P
Hunter CN
Real-space refinement in PHENIX for cryo-EM and crystallography
Acta Crystallogr., Sect. D: Biol. Crystallogr.
DK
74
531
544
2018
0907-4449
0766
ABCRE6
7pqd
FULLOVERLAP
Light harvesting core complex
Light harvesting core complex
0
1
2
3
4
5
6
7
8
Cereibacter sphaeroides 2.4.1
LH1-alpha
Cereibacter sphaeroides 2.4.1
0.00684418
28
LEVO
(FME)SKFYKIWMIFDPRRVFVAQGVFLFLLAVMIHLILLSTPSYNWLEISAAKYNRVAVAE
LH1-beta
Cereibacter sphaeroides 2.4.1
0.005592361
28
LEVO
MADKSDLGYTGLTDEQAQELHSVYMSGLWLFSAVAIVAHLAVYIWRPWF
RC-H
Cereibacter sphaeroides 2.4.1
0.026544471
2
LEVO
MVGVTAFGNFDLASLAIYSFWIFLAGLIYYLQTENMREGYPLENEDGTPAANQGPFPLPKPKTFILPHGRGTLTVPGPES
EDRPIALARTAVSEGFPHAPTGDPMKDGVGPASWVARRDLPELDGHGHNKIKPMKAAAGFHVSAGKNPIGLPVRGCDLEI
AGKVVDIWVDIPEQMARFLEVELKDGSTRLLPMQMVKVQSNRVHVNALSSDLFAGIPTIKSPTEVTLLEEDKICGYVAGG
LMYAAP
RC-L
Cereibacter sphaeroides 2.4.1
0.031346388999999995
2
LEVO
ALLSFERKYRVPGGTLVGGNLFDFWVGPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPALEYGLGGAPL
AKGGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAYLTLVLFRPVMMGAWGYAFPYGIWTHLDWVSNT
GYTYGNFHYNPAHMIAISFFFTNALALALHGALVLSAANPEKGKEMRTPDHEDTFFRDLVGYSIGTLGIHRLGLLLSLSA
VFFSALCMIITGTIWFDQWVDWWQWWVKLPWWANIPGGING
Reaction center protein M chain
Cereibacter sphaeroides 2.4.1
0.034398543
2
LEVO
AEYQNIFSQVQVRGPADLGMTEDVNLANRSGVGPFSTLLGWFGNAQLGPIYLGSLGVLSLFSGLMWFFTIGIWFWYQAGW
NPAVFLRDLFFFSLEPPAPEYGLSFAAPLKEGGLWLIASFFMFVAVWSWWGRTYLRAQALGMGKHTAWAFLSAIWLWMVL
GFIRPILMGSWSEAVPYGIFSHLDWTNNFSLVHGNLFYNPFHGLSIAFLYGSALLFAMHGATILAVSRFGGERELEQIAD
RGTAAERAALFWRWTMGFNATMEGIHRWAIWMAVLVTLTGGIGILLSGTVVDNWYVWGQNHGMAPLN
Q3J1A6
PufZ
Cereibacter sphaeroides 2.4.1
0.0035173229999999997
4
LEVO
MAYMFGIIVFLAMLAVCWFGFMAAERQAGRL
PufY
Cereibacter sphaeroides 2.4.1
0.005126067
2
LEVO
EVSEFAFRLMMAAVIFVGVGIMFAFAGGHWFVGLVVGGLVAAFFAATPN
PufX
Cereibacter sphaeroides 2.4.1
0.006024157
2
LEVO
PKTNLRLWVAFQMMKGAGWAGGVFFGTLLLIGFFRVVGRMLPIQENQAPAPNITG
BACTERIOCHLOROPHYLL A
0.0009115039999999999
64
BCL
3,4-DIHYDROSPHEROIDENE
0.0005709299999999999
54
SP2
1,2-Distearoyl-sn-glycerophosphoethanolamine
0.000748065
4
3PE
(2R,5R,11R,14R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-2,14-bis(tetradecanoyloxy)-4,6,10,12,16-pentaoxa-5,11-diphosphatriacont-1-yl tetradecanoate
0.001241633
4
CD4
UBIQUINONE-1
0.00025028999999999996
2
UQ1
UBIQUINONE-10
0.0008633429999999999
4
U10
BACTERIOPHEOPHYTIN A
0.000889215
4
BPH
1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL
0.0007951159999999999
2
SQD
DODECYL-BETA-D-MALTOSIDE
0.000510615
2
LMT
FE (III) ION
5.5845e-05
2
FE
water
1.8015e-05
144
HOH
singleParticle
particle
4.0
7.8
20.0
HEPES
20 mM HEPES, pH 7.8, 0.03% beta-DDM
Quantifoil R1.2/1.3
COPPER
300
GLOW DISCHARGE
AIR
ETHANE
99
277
QF R1.2/1.3 300 mesh Cu grid.
In 20 mM HEPES, pH 7.8, 0.03% beta-DDM buffer solution
FEI TITAN KRIOS
FLOOD BEAM
BRIGHT FIELD
FIELD EMISSION GUN
300
50.0
2.7
0.8
2.2
120000.0
FEI TITAN KRIOS AUTOGRID HOLDER
NITROGEN
80.0
FEI FALCON IV (4k x 4k)
1
5058
12.21
45.36
1
223786
7PIL
1
C2
BACK PROJECTION
2.9
FSC 0.143 CUT-OFF
RELION
3.1
58945
MAXIMUM LIKELIHOOD
RELION
3.1
MAXIMUM LIKELIHOOD
RELION
3.1
4
RELION
3.1