2024-11-13 REL PDBe PDBe PDBe 2021-08-19 2022-05-25 2022-05-25 2024-11-13 European Research Council (ERC) 760067 United Kingdom German Research Foundation (DFG) 426290502 United Kingdom Wellcome Trust 103139 United Kingdom Wellcome Trust 203149 United Kingdom 70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells Xue L Lenz S Rappsilber J Mahamid J In-cell cryo-electron tomography, sub-tomogram analysis, ribosome, translation intermediate state, spectinomycin, TRANSLATION Xue L Lenz S Zimmermann-Kogadeeva M Tegunov D Cramer P Bork P Rappsilber J Mahamid J Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature UK 610 205 211 2022 36171285 doi:10.1038/s41586-022-05255-2 1476-4687 0006 NATUAS Xue L Lenz S Zimmermann-Kogadeeva M Tegunov D Cramer P Bork P Rappsilber J Mahamid J Visualizing translation dynamics at atomic detail inside a bacterial cell Biorxiv US 2021 doi:10.1101/2021.12.18.473270 2692-8205 7pib FULLOVERLAP Cryo-electron tomograms of spectinomycin-treated Mycoplasma pneumoniae cells Cryo-electron tomograms of spectinomycin-treated Mycoplasma pneumoniae cells 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55
Ribosome sub-tomograms extracted in silico from tomograms of intact cell, refinement with a 70S mask
Mycoplasma pneumoniae M129 50S ribosomal protein L34 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.005616773 1 LEVO MKRTYQPSKLKRAKTHGFLARMATASGRKVLKLRRKKQRAQLTVSSER P78006 50S ribosomal protein L35 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.006793135 1 LEVO MKVKSAAKKRFKLTKSGQIKRKHAYTSHLAPHKTTKQKRHLRKQGTVSASDFKRIGNLI P75447 50S ribosomal protein L36 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.004400488 1 LEVO MKVRASVKPICKDCKIIKRHQIVRVICKTQKHKQRQG P52864 Elongation factor G Mycoplasma pneumoniae M129 0.07659846099999999 1 LEVO MARTVDLINFRNFGIMAHIDAGKTTTSERILFHSGRIHKIGETHDGESVMDWMEQEKERGITITSAATSVSWKNCSLNLI DTPGHVDFTVEVERSLRVLDGAIAVLDAQMGVEPQTETVWRQASRYEVPRIIFVNKMDKTGANFERSVQSIQQRLGVKAV PIQLPIGAENDFNGIIDLIEEKVYFFDGGKEEKAEEKPIPDQFKDQVKQMRAHLVEEVANFDDQLMADYLEGKEISIADI KRCIRKGVIGCQFFPVLCGSAFKNKGIKLLLDAVVDFLPSPVDVPQAKAYGEDGNEVLISASDDAPFVGLAFKVATDPFV GRLTFVRVYSGVLKSGSYVKNVRKNKKERVSRLVKMHAQNRNEIEEIRAGDICAIIGLKDTTTGETLVDDKIDVQLEAMQ FAQPVISLAVEPKTKADQEKMSIALSKLAEEDPTFKTFTDPETGQTIIAGMGELHLDILVDRMRREFKVEVNVGAPQVSF RETFNKESEVEGKYIKQSGGRGQYGHVKIRFEPNKDKGFEFVDKIVGGRIPREYIKPVQAGLENAMASGPLAGYPMIDIK ATLFDGSFHEVDSSEMAFKIAASLALKEAGKVCSPVLLEPIMAIEVTVPEQYFGDTMGDISSRRGLIEGTEQRDNVQVIK AKVPLKEMFGYATDLRSFSQGRGNYVMQFSHYAETPKSVVNEIIATKK P75544 30S ribosomal protein S2 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.033468629 1 LEVO MSELITTPVETTAKAELVSLAKLGEMRTHVGMVKRYWNPKMGFFIEPERKHNNDHFVLELQRQSLQTAYNYVKEVAQNNG QILFVGTKNDYVKKLVNNIAKRVDVAFITQRWLGGTLTNFKTLSISINKLNKLVEKQAENAADLTKKENLMLSREIERLE KFFGGVKSLKRLPNLLIVDDPVYEKNAVAEANILRIPVVALCNTNTNPELVDFIIPANNHQPQSTCLLMNLLADAVAEAK AMPTMFAYKPDEEIQIEIPQKQEAPRQVVNRANSKQITSQRLNITRNPEVLTRE P75560 30S ribosomal protein S3 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.030657205 1 LEVO MGQKVNSNGLRFGINKNWISRWTANSHAQTAKWLIEDEKIRNLFFVNYRNAQVSNVEIERTQATVDVFVYAAQPAFLIGS ENKNIQKITKQIKQIIGRTTNLDLTINEIGSPMLSARIIARDLANAIEARVPLRTAMRQSLIKVLKAGANGIKVLVSGRL NGAEIARDKMYIEGNMPLSTLRADIDYALEKAQTTYGVIGVKVWINRGMIYTKGLNRTPAHILHPQKKQPNRQNQQPRHF NQGQVLSANKLTGSDVETSSIQALTKPNKEDKQ P41205 30S ribosomal protein S4 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.023817645 1 LEVO MKYTGSIFKRSRRLGFSLLENNKEFSKGKKRKTIPGQHGNRFRSSTMSGYAQQLQEKQRMQYMYGITDKQFRRLFRLVLK QRGNLAVNLFRVLESRLDNIVYRMGFAPTRRSARQLVNHGHVLLNDRTVDTPSIILNPGDKVRLKAKTIKIPIVKAASES GVVSPFVETNNKTFEGTYVRFPERSELPAGINESYVVEWYKRLVK P46775 30S ribosomal protein S5 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.024138008 1 LEVO MTDQNQKANQGNGLQTTNLQAHAQRKHNLRPSSEGIKKAVSKKEGGGHNRNNQNRRFQKPAFKSEFEERIVKLKRISKTT KGGRNMRFSVLVVVGNRKGKIGYGIAKALEVPNAIKKAIKAAHNSLHTIEIHKGSIYHEVIGRSGASRVLLKPAPQGTGI IAGGAIRAIIELAGYSDIYTKNLGRNTPINMIHATMDGILKQLSPRRVAILRNKNLNEL Q50301 30S ribosomal protein S6 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.025430465 1 LEVO MQYNIILLVDGSLSLEQANQVNEKQQQTLTNVEGLQTEYLGLKELAYPIKKQLSAHYYRWKFSGDNQSTKDFKRTANINK QVLRELIINLEREYGYLASINPKKQQLALQKRAKYDEIIARENNPENPDVPVTSGLASTQPRLSRTEKAQKPKEELWDVV QKMGNFDSVQANPYRPRFKRFNAEHVNQRQNQQNNNNNRFDRNRNRQHNRFKDKQ P75543 30S ribosomal protein S7 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.017897029 1 LEVO MRKNRAPKRTVLPDPVFNNTLVTRIINVIMEDGKKGLAQRILYGAFDLIEQRTKEKPLTVFERAVGNVMPRLELRVRRIA GSNYQVPTEVPQDRKIALALRWIAMFARKRHEKTMLEKIANEIIDASNNTGAAIKKKDDTHKMAEANKAFAHMRW P75545 30S ribosomal protein S8 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.015903083 1 LEVO MITTTKPIKAHFDPVADLLTKINNARKAKLMTVTTIASKLKIAILEILVKEGYLANFQVLENKSKTKRIVTFNLKYTQRR IPSINGVKQISKPGLRIYRPFEKLPLVLNGLGIAIISTSDGVMTDKVARLKKIGGEILAYVW Q50304 30S ribosomal protein S9 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.015149735 1 LEVO MEKQSYYGLGRRKSSSAKVYLTPTQDKGKITVNRRDPSEYFPNKLVIQDMEQPLDLTDLKKNFDINVVVKGGGFTGQAGA IRLGIVRALLQFNPELKKILKSKKLTTRDKRVKERKKFGLYGARRAPQFTKR P75179 30S ribosomal protein S10 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.012226570999999999 1 LEVO MNAANAVKYPELKIKLESYDSTLLDLTTKKIVEVVKGVDVKIKGPLPLPTKKEVITIIRSPHVDKASREQFEKNRHKRLM ILVDVNQGAIDSLKRIKIPVGVTLRFSK P75581 30S ribosomal protein S11 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.012709851 1 LEVO MAKKKKINVSSGIIHVSCSPNNTIVSASDPGGNVLCWASSGTMGFKGSRKKTPYSAGIAADKVAKTVKEMGMATVKLFVK GTGRGKDTAIRSFANAGLSITEINEKTPIPHNGCKPPKRPR Q50296 30S ribosomal protein S12 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.01566658 1 LEVO MATIAQLIRKPRKKKKVKSKSPALHYNLNLLNKKVTNVYSPLKRGVCTRVGTMTPKKPNSALRKYAKVRLTNGFEVLTYI PGEGHNLQEHSVTLLRGGRVKDLPGVRYHIVRGTLDTVGVEKRRQQRSAYGAKKPKAKS P75546 30S ribosomal protein S13 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.014209606999999999 1 LEVO MARILGIDIPNQKRIEIALTYIFGIGLSRSQAILKQANINPDKRVKDLTEEEFVAIRNVASAYKIEGDLRREIALNIKHL SEIGAWRGLRHRKNLPVRGQRTRTNARTRKGPRKTVANKKIESK Q50297 30S ribosomal protein S14 type Z Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.006901363999999999 1 LEVO MAKKSLKVKQTRIPKFAVRAYTRCQRCGRARAVLSHFGVCRLCFRELAYAGAIPGVKKASW Q50305 30S ribosomal protein S15 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.009921687 1 LEVO MQIDKNGIIKSAQLHDKDVGSIQVQVSLLTSQIKQLTDHLLANKKDFISKRGLYAKVSKRKRLLKYLKHNDLEAYRNLVK TLNLRG P75173 30S ribosomal protein S16 Mycoplasma pneumoniae M129 0.010806921 1 LEVO MVKIRLMRMGRVHYPTYRIVAVDSRVKRDGKYIALIGHLNPALKENKCKIDEAVALEWLNKGAKPTDTVRSLFSQTGLWK KFVESKKKPVAKSK A0A0H3DLS7 30S ribosomal protein S17 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.009859643 1 LEVO MKRNQRKVLIGIVKSTKNAKTATVQVESRFKHPLYHKSVVRHKKYQAHNEGEVLAKDGDKVQIVETRPLSATKRFRIAKI IERAK Q50309 30S ribosomal protein S18 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.012411522 1 LEVO MMNNEHDNFQKEVETTTETTFNREEGKRMVRPLFKRSKKYCRFCAIGQLRIDLIDDLEALKRFLSPYAKINPRRITGNCQ MHQRHVAKALKRARYLALVPFVKD P75541 30S ribosomal protein S19 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.010057626 1 LEVO MSRSAKKGAFVDAHLLKKVIDMNKQEKKRPIKTWSRRSTIFPEFVGNTFAVHNGKTFINVYVTDDMVGHKLGEFSPTRNF KQHTANR P75576 30S ribosomal protein S20 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.009993598999999999 1 LEVO MANIKSNEKRLRQNIKRNLNNKGQKTKLKTNVKNFHKEINLDNLGNVYSQADRLARKGIISTNRARRLKSRNVAVLNKTQ VTAVEGK P75237 30S ribosomal protein S21 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.007539181999999999 1 LEVO MPKIEVKNDDLELALKKFKRVSLEIRRLAQRHEYHLRKGMRLREKRKIAQKKRRKFRNMV P57079 50S ribosomal protein L7/L12 Mycoplasma pneumoniae M129 0.013122263999999998 1 LEVO MAKLDKNQLIESLKEMTIMEIDEIIKAVEEAFGVSATPVVAAGAVGGTQEAASEVTVKVTGYTDNAKLAVLKLYREIAGV GLMEAKTAVEKLPCVVKQDIKPEEAEELKKRFVEVGATVEIK P75239 50S ribosomal protein L2 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.031966871 1 LEVO MPIKKIISRSNSGIHHSTVIDYKKLLTTNKNKPEKSLLVTLKKHGGRNNQGKITVRHQGGRNKRKYRIIDFKRTHYDNIE ATVKSIEYDPNRSCFVSLITYANGAKSYIISPDGIKVGDKILASEHPIDIKPGFSMPLAFIPEGTQVHNIELHPKGGGQI ARSAGSYARILGQDETGKYVILQLLSGETRKFLKECRATVGVVSNLDHNLVVIGKAGRNRHRGIRPTVRGSAMNPNDHPH GGGEGRSPVGRDAPRTPWGKRHMGVKTRNMKKASTNLIIRNRKGEQY P75577 50S ribosomal protein L3 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.031298172 1 LEVO MEIRGIFGVKVGMSQVFTTNNERLPITVIYCEPNQVAGVKTEAKDKYSATLLSFDTVENKKLNKPQQGFFEKNNLKPTKH LQEIRNMTGFEMGQQITPQNLFQVGEYVDVSAISKGRGFTGAIKRWNFKIGPLGHGAGYPHRFQGSVQAGRGGASAQRVF KGKKMSGHYGHEKVTVQNLRIVGFDEANMLVLVSGAIAGPEGGVVLIRTAKKKPGVVKPIELAVQTEKAPEAKPAKLSKK KQAKELAKAQAANQQTVEAKVDTPVVEPKPTEVKKAAPVVEKKGEDK P75580 50S ribosomal protein L4 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.023632571999999998 1 LEVO MAKLKLIKIDGSFETEPVKLSPGLIAKELKQQPVFDAVLVEQASWRQGTHSILTKGEVRGGGKKPYKQKHTGKARQGSTR NPHFVGGGIVFGPKPNRNYSLKLNKKAHTAALHTVWSEKLASDNTHLVDQNLFNKTEGKTKVMMQFLKSAKLLDKNVLFV VNTLNTNLEQSTSNIKNVQVKHLDKVSVRDLMLANALLVEKEVLKALEGKFK P75579 50S ribosomal protein L5 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.020270833999999998 1 LEVO MNNLKAHYQKTIAKELQKSFAFSSIMQVPRLEKIVINMGVGDAIRDSKFLESALNELHLISGQKPVATKAKNAISTYKLR AGQLIGCKVTLRGERMWAFLEKLIYVALPRVRDFRGLSLKSFDGRGNYTIGIKEQIIFPEIVYDDIKRIRGFDVTLVTST NKDSEALALLRALNLPLVKG Q50306 50S ribosomal protein L6 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.020624062000000002 1 LEVO MSKIGNRTITLDPAKVNLNFQKDHIAVKGPLGQIELKLPPNLPLKFELKDNNLQITRNNELKQSKIFHGTYNALITNAII GVTQGFEKKLRLVGVGYRANVEGETLNLQLGYSHPIKEKIPKGLTVKVEKNTEITISGISKELVGQFATEVRKWRKPEPY KGKGVLYFDEVIVRKAGKTAEGKK Q50303 50S ribosomal protein L9 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.017185037 1 LEVO MKVILKQDVSNLGKRFDVVDVKDGYAIHFLFPKKLAAPLTKKSLQDRDLFLKKQQEHYEINKALSHKLKEVIEQTELHFS LKEHNGRPYGSIITKQIINQAHTKGMALQKFMFKDNVRLGFGDHEITLHIFEDTTAVLKVKVTPDNGVK P75540 50S ribosomal protein L10 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.017645719 1 LEVO MEAKKDKAQQVADVSHLLSTSAGFVIFDYTSMSAIEATSIRKKLFKNGSKIKVIKNNILRRALKAGKFEGIDETAIKGKL AVAVGVNEIVETLKAVDGVVKAKEAMNFVCGYFDNRAFNSADLEKIAKLPGRNELYGMFLSVLQAPLRKFLYALEAVKAA K P75240 50S ribosomal protein L11 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.01480361 1 LEVO MAKKTITRIAKINLLGGQAKPGPALASVGINMGEFTKQFNEKTKDKQGEMIPCVITAYNDKSFDFILKTTPVSILLKQAA KLEKGAKNAKTIVGKITMAKAKEIAQYKLVDLNANTVEAALKMVLGTAKQMGIEVIE P75550 50S ribosomal protein L13 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.016821476999999998 1 LEVO MQKTSMLTKEQANKRRQWYIVDAAGLVLGKLAVKAADLIRGKNKVDFTPNQDCGDYLIIINSDQVVLTGNKKENEFWYHH SQYIGGIKKVSGRDMLKKQSDKLVYNAVKGMLPDNRLSRRWITKVHVFKGDKHNMEAQKPTTLNWS P75178 50S ribosomal protein L14 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.013478906 1 LEVO MVSFMTRLNVADNTGAKQVGIIKVLGSTRKRYAFLGDVVVVSVKDAIPSGMVKKGQVLRAVIVRTKKGQQRKDGTHLKFD DNACVLIKEDKSPRGTRIFGPVARELRERGYNKILSLAVEVV Q50308 50S ribosomal protein L15 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.016768812 1 LEVO MELNQLKSVPKARNHKTKTLGRGHGSGLGKTSGRGQKGQKARKSGLTRPGFEGGQTPLYRRLPKFGNARKGFLKQEWVVL NLNKIAKLKLDKINRASLIEKQVISAKSQLPIKLIGHTKLEKPLHFEVHKVSKQALKAVENANGSVKLLEK Q50300 50S ribosomal protein L16 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.015646478999999998 1 LEVO MLQPKRTKYRKPHNVSYEGKAKGNSYVAFGEYGLVATKGNWIDARAIESARIAISKCLGKTGKMWIRIFPHMSKTKKPLE VRMGSGKGNPEFWVAVVKQGTVMFEVANIPESQMIKALTRAGHKLPVTWKILKREEVSA P41204 50S ribosomal protein L17 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.014270727 1 LEVO MSYINKPGKTSAWRVMTVRQQVSAVLAYGKIETTLKKAKNTQKRLDKLITLAKVDNFNNRRQVKKWLLNTNLFDVDQLMD HLFSKVAPKYEKTPGGYSRVLKLGPRRGDATEMAILQLTDAKYK Q59547 50S ribosomal protein L18 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.013073255999999998 1 LEVO MKTRTEQRRLRHKRIVKKIRATNHDNRVVLMVIKSLNHISVQAWDFSQNIVLASSSSLALKLKNGNKDNAKLVGQDIADK LVKLKLTNVVFDTGGSKYHGRIAALAEAARERGLNF Q50302 50S ribosomal protein L19 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.013870326999999998 1 LEVO MKKINKQALIDLVEQKQLKAYVPEFSAGDEVNVAIKLKEKEKVRIQNFTGTVLRRRGKGISETFIVRKTTDGIPIEKNFQ IHNPNISIELKRRGKVRRAYISYMRERSGKAAKIKERKQ P75133 50S ribosomal protein L20 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.014742431 1 LEVO MRIKGGKQTRVRRKKWLKQASGSFGTRHASYKVAKQTVIQAAKYAYRDRRNKKRDFRSLWILRLNAALREQGMTYSVFIN LLKKHNIEINRKVLSELAIKEPSKFNLIVQKVKSEQPKAAKPAALGN P78023 50S ribosomal protein L21 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.011664824 1 LEVO MHAIVVCGSKQYLVHENDTFFVEKLEAPVGKEIQLDKVLMLDEKIGAPYLEKARVVCVVEKHGLQRKVNVIKHISQKHHL KKYGHRQPYTKLKVVRFVHD P78026 50S ribosomal protein L22 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.017355402 1 LEVO MIAFAKQFRVRISPQKARLVCQLIVGKKTADAQNILSNTPKKAATLIAKLLNSAIANATNNHGMNGDALYVFECVANQGP SMKRTIPRAKGSSNMITKRSSNLVVKLSDNPNERQELIKQQKALVKKRVEGQQKAKMARQKAVTSVVKAPSKTQGGVQK P75575 50S ribosomal protein L23 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.02589274 1 LEVO MDVTNVLLKPVLTEKVYFNQMGETKKYVFVVNPKASKTRVKLAFELVYGIKPLKVNTLIRKPTTIRGGSRFPGLSKLEKL AVITLPKGIAISVTGEAPEKTDKPADKTTLKESTVKEIKDTKNSPEAVVKTAVEALQIKPTAAPVTTAPLQTVAVKVAKE VKEVKVEKPVKVEKPTKPAKVAKEAKTTKVAKETKAEKSVQTTKVAKETKTEKSAKTTKTTATKTTKTKTTKKEVKK P75578 50S ribosomal protein L24 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.012461864999999999 1 LEVO MQRIKKGDKVVVITGKNKGGSGIVLKIMPARQQAIVEGLNKVTRHKKKDQTTKRAAKQSTGKVQQEAPIFLSKLALFDQK AKQQTIGKIKYVMDPKTNKKTRVFKKSNNTL Q50307 50S ribosomal protein L27 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.011527338 1 LEVO MNNKYFLTKIDLQFFASKKGVGSTKNGRDSHAKRLGAKKADGQMIRTGQIIYRQRGTRVYPGVNVGLGSDDTLFALSDGL VKYQKFGPKQGKTRVSVVKHKLDA P75458 50S ribosomal protein L28 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.007549902 1 LEVO MAKKDQLTLRGPLYGNNRSHSKTITRRKWNVNLQPCKVKTADGKTTRILVSTRTLRTLKKHNRLS P75171 50S ribosomal protein L29 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.013003328 1 LEVO MTVAKELRQKSSEELVKLVIKLKGELLEYRFKLAHGELDKPHLINQTRRLLATILTILTERKLNWQEEQAKYKLLTKKTN EAAVNAWKQHLEANKAKLLKSRAKREDASKK Q50310 50S ribosomal protein L31 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.010980657 1 LEVO MKKDFHFPSQSVSFKCASCSNSFTIESTLKQKEITIDICGKCHPFYIGELTKQTVHGRAEKLSGKFNAGKAFLENKTPKK AKGKTEEYTKHRSLNEL P78020 50S ribosomal protein L32 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.006641897 1 LEVO MAVQQRRSSKHRRDKRRSHDALTAQALSVCQKCGKKKLFHRVCSCGMYGDLRVKKAY P75238 50S ribosomal protein L33 1 Mycoplasma pneumoniae M129 ATCC 29342 / M129 0.0062986119999999994 1 LEVO MAVKRSTRLGCNDCREINYLTFKNVKKNPEKLALNKFCSRCRKVVVHKEVKRK P78015 23S ribosomal RNA Mycoplasma pneumoniae M129 0.9409115 1 UACAAUAAGUUACUAAGGGCUUAUGGUGGAUGCCUUGGCACUAAUAGGCGAUGAAGGACGUGUUAACCUGCGAUAAGCUU CGGGUAGGUGGUAAGAACCUCAGAUCCGGAGAUUUCCGAAUGGAGCAAUCCGGUAGUUGGAAACAGCUAUCAUUAAUUGA UGAAUAAAUAGUCAAUUAAAGCAAUACGUGGUGAAGUGAAACAUCUCAGUAGCCACAGGAAAAGAAAACGAAUGUGAUUC CGUGUGUAGUGGCGAGCGAAAGCGGAACAGGCCAAACUUAUCAUUAGAUAGGGGUUGUAGGGCUUGCAAUGUGGACUUGA AAACGAUAGAAGAAGCUGUUGGAAAGCAGCGCGCAAAAGGGUGAUAGCCCCGUAUUUGAAAUUGUUUUCAUACCUAGCGA GAUCCCUGAGUAGCUCGGAAAACGUUAUUUUGAGUGAAUCUGCCCAGACCAUUGGGUAAGCCUAAAUACUAAUUAGUGAC CGAUAGCGAAACAGUACCGUGAGGGAAAGGUGAAAAGAACCCAGAGAUGGGAGUGAAAUAGAUUCUGAAACCAUAUGCCU ACAACGUGUCAGAGCACAUUAAUGUGUGAUGGCGUGCGUUUUGAAGUAUGAGCCGGCGAGUUAUGAUAGCAAGCGUUAGU UAACCAGGAGAUGGGGAGCUGUAGCGAAAGCGAGUUUUAAAAGAGCGUUUGUUUGUUAUUAUAGACCCGAAACGGGUUGA GCUAGUCAUGAGCAGGUUGAAGGUUGAGUAACAUCAACUGGAGGACCGAACCGACUCUCGUUGAAACGAUAGCGGAUGAC UUGUGAUUAGGGGUGAAAUUCCAAUCGAAAUCCGUGAUAGCUGGUUCUCGUCGAAAUAGCUUUAAGGCUAGCGUGAGAUC ACAAAUAAGUGGAGGUAAAGCUACUGAAUGUAUGAUGGCGCCACCUAGGCGUACUGAAUACAAUUAAACUCUGAAUGCCA UUUAUUUUAUUCUCGCAGUCAGACAGUGGGGGAUAAGCUUCAUUGUCAAGAGGGGAAGAGCCCAGAUCAUUAAAUAAGGU CCCCAAAAUAUACUAAGUGGAAAAGGAUGUGAAAGUGCUAAAACAGCAAGGAUGUUGGCUUAGAAGCAGCCAUCGUUUAA AGAGUGCGUAACAGCUCACUUGUCGAGUGUUUUUGCGCCGAAGAUGUAACGGGGCUAAGUAUAUUACCGAAUUUAUGGAU AAGAUUUAUAUCUUGUGGUAGACGAGCGUUGUAUUGGAGUUGAAGUCAAAGCGUGAGCAUUGGUGGAUCCAAUACAAGUG AGAAUGCCGGCAUGAGUAACGCUUGGGAGUGAGAAUCUCCCAAACCGAUUGACUAAGGUUUCCUGGACCAGGGUCGUCCU UCCAGGGUUAGUCUGGACCUAAGCUGAGGCUGAAAAGCGUAGGCGAUGGACAACAGGUUAAUAUUCCUGUACUUACAGUU AGACUGAUGGAGUGACAAAGAAGGUUUUCCACCCCCAUAAUUGGAUUUGGGGAUAAAUCAUAAGGUGGUACAAUAGGCAA AUCCGUUGUGCAUAACAUUGAGUGAUGAUGUCGAGUGAAUGAGUGAUCAAGUAGCGAAGGUGGUAUUAAUCAUGCUUUCA AGAAAAGCUUCUAGGGUUAAUCUAGCUGUAACCAGUACCGAGAACGAACACACGUAGUCAAGGAGAGGAUCCUAAGGUUA GCGAGUGAACUAUAGCCAAGGAACUCUGCAAAUUAACCCCGUAAGUUAGCGAGAAGGGGUGCUUAUGUAAAAGUAAGCCG CAGUGAAGAACGAGGGGGGACUGUUUAACUAAAACACAACUCUAUGCCAAACCGUAAGGUGAUGUAUAUGGGGUGACACC UGCCCAGUGCUGGAAGGUUAAAGAAGGAGGUUAGCGCAAGCGAAGCUUUUAACUGAAGCCCCAGUGAACGGCGGCCGUAA CUAUAACGGUCCUAAGGUAGCGAAAUUCCUAGUCGGGUAAAUUCCGUCCCGCUUGAAUGGUGUAACCAUCUCUUGACUGU CUCGGCUAUAGACUCGGUGAAAUCCAGGUACGGGUGAAGACACCCGUUAGGCGCAACGGGACGGAAAGACCCCGUGAAGC UUUACUGUAGCUUAAUAUUGAUCAGGACAUUAUCAUGUAGAGAAUAGGUAGGAGCAAUCGAUGCAAGUUCGCUAGGACUU GUUGAUGCGAAAGGUGGAAUACUACCCUUGGUUGUGUGCUGUUCUAAUUGGUAACUGUUAUCCAGUUUCAAGACAGUGUU AGGUGGGCAGUUUGACUGGGGCGGUCGCCUCCUAAAAGGUAACGGAGGCGUACAAAGGUACCUUCAGUACGGUUGGAAAU CGUAUGUAGAGUGUAAUGGUGUAAGGGUGCUUGACUGUGAGACAUACAGGUCGAACAGGUGAGAAAUCAGGUCAUAGUGA UCCGGUGGUCCAGUAUGGAAUGGCCAUCGCUCAACGGAUAAAAGCUACUCCGGGGAUAACAGGCUGAUACUGCCCAAGAG UUCAUAUCGACGGCAGUGUUUGGCACCUCGAUGUCGACUCAUCUCAUCCUCGAGCUGAAGCAGGUUCGAAGGGUUCGGCU GUUCGCCGAUUAAAGAGAUACGUGAGUUGGGUUCAAACCGUCGUGAGACAGGUUGGUCCCUAUCUAUUGUGCCCGUAGGA AGAUUGAAGAGUGUUGCUUCUAGUACGAGAGGACCGAAGCGAGGACACCUCUUAUGCUCCAGUUGUAGCGCCAGCUGCAC CGCUGGGUAGUAACGUGUCUAUUAGAUAAACGCUGAAAGCAUCUAAGUGUGAAACUAUCUCAAAGAUUAAUCUUCCCAUU UCGCAAGAAAGUAAGAGCCGUCAAAGACGAUGACGUUGAUAGGUUACAGGUGUAAGCAUAGUGAUAUGUUGAGCUGAGUA AUACUAAUUGCUCGAGGACUUAUUGGA 5S ribosomal RNA Mycoplasma pneumoniae M129 0.034796676 1 UUUGGUGCCCAUGUCGCUGUGGAAACACCUGGUUCCAUUUCGAACCCAGCAGUUAAGCACAGUGGAGCCGAAUGUAGCUG UUUCAGUGAGAAUAGGAAAGCACCAAGC 16S ribosomal RNA Mycoplasma pneumoniae M129 0.49124362499999996 1 UUUUUCUGAGAGUUUGAUCCUGGCUCAGGAUUAACGCUGGCGGCAUGCCUAAUACAUGCAAGUCGAUCGAAAGUAGUAAU ACUUUAGAGGCGAACGGGUGAGUAACACGUAUCCAAUCUACCUUAUAAUGGGGGAUAACUAGUUGAAAGACUAGCUAAUA CCGCAUAAGAACUUUGGUUCGCAUGAAUCAAAGUUGAAAGGACCUGCAAGGGUUCGUUAUUUGAUGAGGGUGCGCCAUAU CAGCUAGUUGGUGGGGUAACGGCCUACCAAGGCAAUGACGUGUAGCUAUGCUGAGAAGUAGAAUAGCCACAAUGGGACUG AGACACGGCCCAUACUCCUACGGGAGGCAGCAGUAGGGAAUUUUUCACAAUGAGCGAAAGCUUGAUGGAGCAAUGCCGCG UGAACGAUGAAGGUCUUUAAGAUUGUAAAGUUCUUUUAUUUGGGAAGAAUGACUUUAGCAGGUAAUGGCUAGAGUUUGAC UGUACCAUUUUGAAUAAGUGACGACUAACUAUGUGCCAGCAGUCGCGGUAAUACAUAGGUCGCAAGCGUUAUCCGGAUUU AUUGGGCGUAAAGCAAGCGCAGGCGGAUUGAAAAGUCUGGUGUUAAAGGCAGCUGCUUAACAGUUGUAUGCAUUGGAAAC UAUUAAUCUAGAGUGUGGUAGGGAGUUUUGGAAUUUCAUGUGGAGCGGUGAAAUGCGUAGAUAUAUGAAGGAACACCAGU GGCGAAGGCGAAAACUUAGGCCAUUACUGACGCUUAGGCUUGAAAGUGUGGGGAGCAAAUAGGAUUAGAUACCCUAGUAG UCCACACCGUAAACGAUAGAUACUAGCUGUCGGGGCGAUCCCCUCGGUAGUGAAGUUAACACAUUAAGUAUCUCGCCUGG GUAGUACAUUCGCAAGAAUGAAACUCAAACGGAAUUGACGGGGACCCGCACAAGUGGUGGAGCAUGUUGCUUAAUUCGAC GGUACACGAAAAACCUUACCUAGACUUGACAUCCUUGGCAAAGUUAUGGAAACAUAAUGGAGGUUAACCGAGUGACAGGU GGUGCAUGGUUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCGUUAGUUACA UUGUCUAGCGAGACUGCUAAUGCAAAUUGGAGGAAGGAAGGGAUGACGUCAAAUCAUCAUGCCCCUUAUGUCUAGGGCUG CAAACGUGCUACAAUGGCCAAUACAAACAGUCGCCAGCUUGUAAAAGUGAGCAAAUCUGUAAAGUUGGUCUCAGUUCGGA UUGAGGGCUGCAAUUCGUCCUCAUGAAGUCGGAAUCACUAGUAAUCGCGAAUCAGCUAUGUCGCGGUGAAUACGUUCUCG GGUCUUGUACACACCGCCCGUCAAACUAUGAAAGCUGGUAAUAUUUAAAAACGUGUUGCUAACCAUUAGGAAGCGCAUGU CAAGGAUAGCACCGGUGAUUGGAGUUAAGUCGUAACAAGGUACCCCUACGAGAACGUGGGGGUGGAUCACCUCCUUUCUA tRNA-Phe Mycoplasma pneumoniae M129 0.024470521 2 GGUCUUGUAGCUCAGUCGGUAGAGCAACGGUCUGAAGAACCGUGUGUCGGCAGUUCGAUUCUGCCCGAGACCACCA SPECTINOMYCIN 0.00033235000000000003 1 SCM subtomogramAveraging cell 7.4 ETHANE-PROPANE HOMEMADE PLUNGER
back-side blotting for 2-3 seconds before plunging using a manual plunger without an environmental chamber.
Mycoplasma pneumoniae M129 cells were grown on gold Quantifoil grids at 37 Celsius. Treatment with spectinomycin was performed for 15 to 20 minutes before plunge freezing.
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 1.5 3.75 81000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K3 (6k x 4k) COUNTING 3.2 1 C1 4.7 FSC 0.143 CUT-OFF RELION 3.0.8 8371 70 13418 PyTom Warp 3.0.7 beta or 3.0.9 RELION 3.0.8 MAXIMUM LIKELIHOOD RELION 3.0.8 emd_13435.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 435.328 435.328 435.328 90.0 90.0 90.0 X Y Z -1.7783467 4.054627 0.025773412 0.16399209 1.7005 1.7005 1.7005 0.66 AUTHOR 7OOC PDB experimental model 7OOD PDB experimental model 4V7C 7 PDB experimental model 4V7C 8 PDB experimental model 4V7D 9 PDB experimental model 4V7D W PDB experimental model FLEXIBLE FIT REAL emd_13435_msk_1.map emd_13435_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 435.328 435.328 435.328 90.0 90.0 90.0 X Y Z -4.1724086 6.181986 0.0039940523 0.5533587 1.7005 1.7005 1.7005 AUTHOR emd_13435_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 435.328 435.328 435.328 90.0 90.0 90.0 X Y Z -4.0395956 5.292908 0.004257097 0.55525243 1.7005 1.7005 1.7005 AUTHOR