2024-07-17 REL PDBe PDBe PDBe 2021-08-19 2022-08-17 2022-08-17 2024-07-17 Israel Science Foundation 569/17 Israel Israel Science Foundation 199/21 Israel Caspy I Fadeeva M green algae, photosystem II, thylakoid, oxygen evolving complex, cryo-EM, stacking, PHOTOSYNTHESIS Caspy I Fadeeva M Mazor Y Nelson N Elife US 12 2023 36799903 doi:10.7554/eLife.81150 2050-084X 7pi5 FULLOVERLAP Dunaliella salina Photosystem II complex Dunaliella salina Photosystem II complex 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 Dunaliella salina Photosystem II protein D1 Dunaliella salina 0.037291488 2 LEVO ENTSLWARFCEWITSTENRLYIGWFGVIMIPTLLTAISVYIIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPTSNA IGLHFYPIWEAASLDEWLYNGGPYQLVVCHFFLGVCCYMGREWELSYRLGMRPWIAVAYSAPVAAATAVFIIYPIGQGSF SDGMPLGISGTFNFMIVFQAEHNILMHPFHMFGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYKFGQEEETYNI VAAHGYFGRLIFQYASFNNSRSLHFFLAVWPVVCIWLTALGISTMAFNLNGFNFNQSVVDSNGRVLNTWADIINRANLGM EVMHERNAHNFPLDLA D0FY08 1.10.3.9 Photosystem II CP47 reaction center protein Dunaliella salina 0.053289516 2 LEVO GLPWYRVHTVVINDPGRLISVHLMHTALVAGWAGAMTLFEIAVFDPSDPVLNPMWRQGMFVLPFLTRLGVTQSWGGWTIS GETSSNPGIWSYEGAAASHIVLSGLLFLASVWHWVYWDLELFRDPRTGKTALDLPKIFGIHLFLAGLLCFGFGAFHVTGV FGPGIWVSDPYGLTGSVQPVAPSWGAEGFDPYNPGGVPAHHIAAGILGVLAGLFHLCVRPSIRLYFGLSMGSIESVLSSS IAAVFWAAFVVAGTMWYGSAATPIELFGPTRYQWDQGFFQQEIQKRVAQSTSEGLSVSEAWAKIPEKLAFYDYIGNNPAK GGLFRTGAMNSGDGIAVGWLGHASFKDQEGRELFVRRMPTFFETFPVVLIDKDGVVRADVPFRKAESKYSIEQVGVSVTF YGGELNGLTFTDPSTVKKYARKAQLGEIFEFDRSTLQSDGVFRSSPRGWFTFGHLSFALLFFFGHIWHGSRTIFRDVFAG IDED D0FY05 Photosystem II reaction center protein Ycf12 Dunaliella salina 0.003217949 2 LEVO SLTLILQLVALFAVVAAGPLVVVLLSVRGGNL D0FY13 Photosystem II CP43 reaction center protein Dunaliella salina 0.049128991999999996 2 LEVO GRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVSHFVPEKPMYEQGLILLPHIATLGYGVGPGGE VLDTFPYFVSGVLHLISSAVLGFGGVYHSLIGPETLEESYPFFGYVWKDKNKMTNILGYHLIILGCGAWLLVLKALYFGG VYDTWAPGGGDVRIISNPTTNAAIIFGYIVKSPFGGDGWIVSVDNLEDIIGGHIWIGTLCILGGIWHIYTTPWPWARRAF VWSGEAYLSYSLAAVSLMGFTACCFAWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLMRS PTGEIIFGGETMRFWDFRGPWVEPLRGPSGLDLVKLKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINAVNFVSPRS WLATSHFCLGFFFFVGHLWHAGRARAAAAGFEKGIDRVDEPVLSMRPLD D0FXY3 Photosystem II D2 protein Dunaliella salina 0.038965383 2 LEVO IGTYQEKRTWFDDADDWLRQDRFVFVGWSGLLLLPCAYFAVGGWLTGCTFVTSWYTHGLASSYIEGCNFLTAAVSTPANS LGHSLLFVWGPEAQGDLTRWFQLGGLWAFVALHGAFGLIGFMLRQFEIARSVNLRPYNAIAFSAPIAVFVSVFLIYPLGQ SGWFFAPSFGVASIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETY SMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEG IRAWMAAQDQPHEKLTLPEEVLPRGNAL A0A1C8XRK9 1.10.3.9 Cytochrome b559 subunit alpha Dunaliella salina 0.008743846999999999 2 LEVO ERPFSDILTSIRYWVIHSITVPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTEDRQDAPLITDRFNALEQVKKLSAQ D0FY01 Cytochrome b559 subunit beta Dunaliella salina 0.0035492989999999997 2 LEVO IFTVRWLAIHAIAVPTIFFLGAITAMQFIQR A0A1C8XRP4 Photosystem II reaction center protein H Dunaliella salina 0.007124381 2 LEVO EPGIVTPLGTLLRPLNSEAGKVLPGWGTTVLMAVAILLFAVFLLIILEIYNSSLILDGVTNSWESLA A0A1C8XRP3 Photosystem II reaction center protein I Dunaliella salina 0.003929648 2 LEVO MLTLKIFVYTVVTFFVGLFIFGFLSNDPSRNPGKG D0FXX5 Photosystem II reaction center protein J Dunaliella salina 0.0037375 2 LEVO IGRIPLWLVGTVVGLLAIGLLAIFFYGSYVGLGSSL A0A1C8XRM8 Photosystem II reaction center protein K Dunaliella salina 0.004159991 2 LEVO KLPEAYAPFSPIVDVLPIIPVLFILLAFVWQASVSFR D0FXX2 Photosystem II reaction center protein L Dunaliella salina 0.004417203000000001 2 LEVO MARPNPNKQVVELNRSSLYWGLLLIFVLAVLFSSYIFN D0FY19 Photosystem II reaction center protein M Dunaliella salina 0.0034370929999999996 2 LEVO EVNILGLTATALFIIIPTSFLLILYVKTAASE D0FXZ3 PsbO Dunaliella salina 0.025874908 2 LEVO LTYDELQGLTYLQVKGTGIANTCPVVEQGTSNVRELKPGDYKLEKFCMEPTSFTVKEEDAKGREEFVKTKLLTRLTYGLD GMNGSMKINNDGSVEFREDEGLDYAATTVKLPGGEYVPFLFTIKEFDGKGTLDSFSGDFLVPSYRGSTFLDPKGRGGATG YDNAIALPAKADADEIQRLNNKSYTPGKGSAVFSVAKVDTETGEIAGVFESIQPSDTEMGAHPAKDIKITGLWYGQLT PsbP Dunaliella salina 0.020425706999999998 2 LEVO AYGEGANVFGRVTNKSGFVPYAGDSFALLLPSKWNPSDEKEVDSIVLRYADNFDAVNNVYVIAQDTDKSSIQDYGSPEEF ISQFGYLLGRQAWAGQTVSEGGFDANKVSSAALLGVATEKDKKGKTYYKFEILSRTADGNEGGRHQLVKATVSNGKLYLL KVQAGDKRWFKGTDKECLGVLDSFTVV Photosystem II reaction center protein T Dunaliella salina 0.003478194 2 LEVO MEALVYTFLLIGTLGIIFFSIFFREPPRIA D0FY04 PSII 6.1 kDa protein Dunaliella salina 0.004698315 2 LEVO LVDDRMNGDGTGLPFGVNDGILGWVIAGTLGTIWAIYFVSQKDL A0A7S3QU88 Hypothetical protein Dunaliella salina 0.002854407 2 LEVO SVTPSLKNFLLSLVAGAVVLAAIAGAVTAV A0A7S3VKF3 Photosystem II reaction center protein Z Dunaliella salina 0.006430616 2 LEVO MTSILQIALLGLVLVSFALVVGVPVVFASPNGWTENKGVVFSGLSVWFLLVFAVGVFNSFA D0FXZ2 LHCII M3 Dunaliella salina 0.024075081999999998 2 LEVO TINQFYGPDRNKWLGPYSTNTPPYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWALLGALGMVTPELLQDDDGI MFGESAIWFKAGAAIFQEGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADD PEAFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTPQ Chlorophyll a-b binding protein, chloroplastic Dunaliella salina 0.023719543 2 LEVO EFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQF GEPVWFKAGAQIFAAGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGAFDPLGLADDP DTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNNAFASATKFTPG A1XKU7 CP29 Dunaliella salina 0.021748460999999997 2 LEVO SLSYLDGHLPGDMGFDPLHLSSPTVSLQIGVDEEDQNQAQNKKGDVEAIFRPEVFGLARFRETEVIHGRWAMLGTLGAIV GEAATGVSWVDAGKVELDGAQYLGQSLPFSISQLIWIEAILVGGVEVLRNNELDLEKRIYPGGAFDPLNLADEEDEEKSF RLKTAEIKHGRLAMVAFLGFGIQAAATGEGALGSLAKFTSSL CP26 Dunaliella salina 0.026233607 2 LEVO PDLEKWYGPDRKLFLPGGLLDRDDVPEYLNGELAGDYGYDPLGLGKDEEQVEKYRANELLHARWAMLAAAGIIIPEGLQA NGADIKGGTWFETGAEMLNGGTLNYFAVPFGVVQNPLPLAAVTLIEIVLLGAVEKFRVDGTGPAGFSPGVGKFDSDIFDG LDKLYPGGPFDPLNLADDPEVFAELQVKEIKNGRLAMIAVLAFAIQSYVTGEGPYANITKHLSDPFGYNLLTVLQGDDRV PTL A0A7S3VRZ8 LHCII M1 Dunaliella salina 0.023537566 2 LEVO SAWYGPDRPLFLGSLSGEPPSYLTGEFPGDYGWDTAGLSADPTTFARYRTIELIHARWALLGALGIITPELLAKNGVPFS EDGAIWFKAGAEIFKEGGLNYLGNENLIHAQSILATLAVQVIVMGAAEGFRANGEAPGVEGLDPLYPGGPFDPLGLADDP EAFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPIQNLQDHLADPGVNNAFASATKFVPTP A0A6S8N9J6 PsbU Dunaliella salina 0.003219625 2 LEVO QRVRTVLDMDDPAKEETVKELRKDINN CA-MN4-O5 CLUSTER 0.00033982699999999996 2 OEX FE (II) ION 5.5845e-05 2 FE2 CHLORIDE ION 3.5453e-05 4 CL CHLOROPHYLL A 0.000893489 160 CLA PHEOPHYTIN A 0.0008712 4 PHO BETA-CAROTENE 0.000536873 16 BCR 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL 0.0007951159999999999 6 SQD 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE 0.0007871579999999999 12 LMG SODIUM ION 2.299e-05 2 NA (1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol 0.000568871 2 C7Z DIACYL GLYCEROL 0.000625018 4 DGA GLYCEROL 9.209399999999999e-05 4 GOL DIGALACTOSYL DIACYL GLYCEROL (DGDG) 0.0009492989999999999 8 DGD 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE 0.00072297 18 LHG trimethyl-[(2~{R})-1-oxidanyl-1-oxidanylidene-4-[(2~{S})-2-[(1~{S})-1-oxidanyloctadecoxy]-3-[(1~{R})-1-oxidanyloctadecoxy]propoxy]butan-2-yl]azanium 0.0007732409999999999 2 LMK BICARBONATE ION 6.1017e-05 2 BCT 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE 0.000749201 2 PL9 PROTOPORPHYRIN IX CONTAINING FE 0.000616487 2 HEM (3R)-beta,beta-caroten-3-ol 0.0005528719999999999 2 RRX CHLOROPHYLL B 0.000907472 46 CHL (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL 0.000568871 18 LUT (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL 0.00060087 8 XAT (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL 0.00060087 10 NEX (2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate 0.00045355 2 LPX 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE 0.000704998 3 3PH SPHINGOSINE 0.000299492 2 SPH water 1.8015e-05 718 HOH singleParticle particle 6.5 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K3 BIOQUANTUM (6k x 4k) 13586 51.81 1 401467 2.78 FSC 0.143 CUT-OFF RELION 3.1 23014 ANGULAR RECONSTITUTION RELION 3.1 ANGULAR RECONSTITUTION RELION 3.1 6KAC PDB experimental model AB INITIO MODEL