2024-11-06 REL PDBe PDBe PDBe 2021-08-03 2022-02-23 2022-02-23 2024-11-06 Not funded HIV-1 Env (BG505 SOSIP.664) in complex with the IgA bNAb 7-269 and the antibody 3BNC117. Fernandez I Bontems F HIV, antibody, bNAb, Env, VIRAL PROTEIN Lorin V Fernandez I Masse-Ranson G Bouvin-Pley M Molinos-Albert LM Planchais C Hieu T Pehau-Arnaudet G Hrebik D Girelli-Zubani G Fiquet O Guivel-Benhassine F Sanders RW Walker BD Schwartz O Scheid JF Dimitrov JD Plevka P Braibant M Seaman MS Bontems F Di Santo JP Rey FA Mouquet H Epitope convergence of broadly HIV-1 neutralizing IgA and IgG antibody lineages in a viremic controller. J.Exp.Med. US 219 2022 35230385 doi:10.1084/jem.20212045 1540-9538 0774 JEMEAV 7pc2 FULLOVERLAP Ternary complex of HIV Env (BG505 SOSIP.664) with bNAbs 3BNC117 (IgG Fab) and 7269 (IgA Fab) Ternary complex of HIV Env (BG505 SOSIP.664) with bNAbs 3BNC117 (IgG Fab) and 7269 (IgA Fab) 0 1 2 3 4 5 6 Homo sapiens Env protomer with one 3BNC117 Fab and one 7-269 Fab 1 1 2 3 4 5 6 Homo sapiens 7-269 IgA Fab heavy chain Homo sapiens 0.026425403999999996 3 Homo sapiens LEVO QMQLVESGGGVVQPGRSLRLSCAASRFDFNRFGMHWVRQAPGKGLEWVAYMSYDGGDRYYADSVKGRFTISRDNSKSTLH LQMDSLRPEDTAVYYCAKDDILGDCSTSHCYWGYYYQGMDVWGHGTTVTVSSASTTSPKVFPLSLCSTQPDGNVVIACLV QGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPHHHHHH 7-269 IgA Fab light chain Homo sapiens 0.023520053 3 Homo sapiens LEVO EIVMTQSPDTLSVSPGERVTLSCRASQSVGSNLVWYQQKPGQSTRVLIYGASTRAATVPARFSGGGSGTEFTLTISSVQS EDFAVYYCYHYNNWPRGSFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNS QESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC gp120, BG505 SOSIP.664 T332N Human immunodeficiency virus BG505 0.054064277 3 Homo sapiens LEVO AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIIS LWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKE YRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEV MIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRK HFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQ AMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRR R gp41 BG505 T332N SOSIP.664 Human immunodeficiency virus BG505 0.017146481999999998 3 Homo sapiens LEVO AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQ LLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD 3BNC IgG Fab heavy chain Homo sapiens 0.024656484 3 Homo sapiens LEVO QVQLLQSGAAVTKPGASVRVSCEASGYNIRDYFIHWWRQAPGQGLQWVGWINPKTGQPNNPRQFQGRVSLTRHASWDFDT YSFYMDLKALRSDDTAVYFCARQRSDYWDFDVWGSGTQVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC 3BNC117 IgG Fab light chain Homo sapiens 0.023022657999999998 3 Homo sapiens LEVO DIQMTQSPSSLSASVGDTVTITCQANGYLNWYQQRRGKAPKLLIYDGSKLERGVPSRFSGRRWGQEYNLTINNLQPEDIA TYFCQVYEFVVPGTRLDLKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDS KDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 20 NAG singleParticle particle 0.3 8.0 10.0 Tris 75.0 NaCl C-flat-2/2 COPPER 300 ETHANE 100 287 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K3 BIOQUANTUM (6k x 4k) 1 45.0 1 C3 2.8 FSC 0.143 CUT-OFF 115394 NOT APPLICABLE NOT APPLICABLE RELION 3.1 emd_13316.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 420 420 420 0 0 0 420 420 420 357.0 357.0 357.0 90.0 90.0 90.0 X Y Z -0.6588376 2.634463 0.0011493887 0.049394008 0.85 0.85 0.85 0.29 AUTHOR Map corresponding to the Env 7269 3BNC117 complex 5V8M PDB experimental model RIGID BODY FIT REAL emd_13316_msk_1.map emd_13316_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 420 420 420 0 0 0 420 420 420 357.0 357.0 357.0 90.0 90.0 90.0 X Y Z -0.06319902 0.18439719 -0.000014156281 0.0031293395 0.85 0.85 0.85 AUTHOR Map obtained by local refinement applying a mask on one protomer