REL PDBe PDBe PDBe 2007-03-06 2007-03-06 2007-04-06 2012-10-24 Reconfiguration of yeast 40S ribosomal subunit domains by the translation initiation multifactor complex. Gilbert RJC Gordiyenko Y von der Haar T Sonnen AF-P Hoffman GW Nardelli M Stuart DI McCarthy JEG Gilbert RJ Gordiyenko Y von der Haar T Sonnen AF Hofmann G Nardelli M Stuart DI McCarthy JE Reconfiguration of yeast 40S ribosomal subunit domains by the translation initiation multifactor complex. PROC.NAT.ACAD.SCI.USA 104 5788 5793 2007 17389391 doi:10.1073/pnas.0606880104 Eukaryotic translation preinitiation complex 43S Eukaryotic translation preinitiation complex 43S 40S-Met-tRNA-eIF2-GMP-PNP-eIF3-eIF1-eIF1A 6 1.941 Small subunit
S. cerevisiae
false Saccharomyces cerevisiae Baker's yeast 1.4 1.4 ribosome-eukaryote: SSU 40S tRNA Saccharomyces cerevisiae Baker's yeast 0.023 0.023 TRANSFER DOUBLE HELIX false eukaryotic translation initiation factor 2 Saccharomyces cerevisiae Baker's yeast Cytosol 0.124 0.124 1 heterotrimer true Saccharomyces cerevisiae eukaryotic translation initiation factor 3 Saccharomyces cerevisiae Baker's yeast Cytosol 0.362 0.362 1 Heteropentamer true Saccharomyces cerevisiae eukaryotic translation initiation factor 1 Saccharomyces cerevisiae Baker's yeast Cytosol 0.012 0.012 1 Monomer true Saccharomyces cerevisiae eukaryotic translation initiation factor 1A Saccharomyces cerevisiae Baker's yeast Cytosol 0.017 0.017 1 Monomer true Saccharomyces cerevisiae singleParticle particle 7.4
38mM HEPES, 135mM KAc, 3.25mM MgAc2, 5mM beta-mercaptoethanol, 10uM GMP-PNP
300 mesh copper grid with lacey carbon film
 ETHANE HOMEMADE PLUNGER
Vitrification instrument: Home-made plunger
Blot with Whatman number 1 paper for 1-2 seconds prior to plunging. FEI/PHILIPS CM200FEG FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 2 2.055 11.685 50000.0 GATAN LIQUID NITROGEN 100 Astigmatism corrected at 100,000 x KODAK SO-163 FILM OTHER 8.33 70 8. Eucentric
The particles were selected manually.
Per micrograph
 C1 OTHER 20.0 FSC 0.5 CUT-OFF IMAGIC, EMAN, FREALIGN, SPIDER, GAP
Final maps were computed from CTF-corrected (by phase flipping) images, and scaled in Fourier space to a scattering model of the structure.
27101
SPIDER Euler angle convention
 emd_1327.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 128 128 128 -64 -64 -64 128 128 128 426.24 426.24 426.24 90 90 90 Z X Y -97.400000000000006 200.0 1.93102 13.2256 3.33 3.33 3.33 21.699999999999999 Reconstruction of the 43S preinitiation complex from S. cerevisiae.
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 RIGID BODY FIT GAP
Protocol: Rigid body
Real space CC and R-factor REAL