E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume

2024-10-16 REL PDBe PDBe PDBe 2021-07-20 2022-02-23 2022-02-23 2024-10-16 German Research Foundation (DFG) WI3285/8-1 Germany Swedish Research Council 2017-03783 Sweden E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume Crowe-McAuliffe C Wilson DN Ribosome, Enterococcus faecalis, PoxtA, ABCF, antibiotic resistance protein Crowe-McAuliffe C Murina V Turnbull KJ Huch S Kasari M Takada H Nersisyan L Sundsfjord A Hegstad K Atkinson GC Pelechano V Wilson DN Hauryliuk V Structural basis for PoxtA-mediated resistance to phenicol and oxazolidinone antibiotics. Nat Commun UK 13 1860 1860 2022 35387982 doi:10.1038/s41467-022-29274-9 2041-1723 Crowe-McAuliffe C Murina V Kasari M Takada H Turnbull KJ Sundsfjord A Hegstad K Atkinson GC Wilson DN Hauryliuk V Structural basis for PoxtA-mediated resistance to Phenicol and Oxazolidinone antibiotics Biorxiv US 2021 doi:10.1101/2021.06.18.448924 2692-8205 Sivertsen A Janice J Pedersen T Wagner TM Hegstad J Hegstad K The Enterococcus Cassette Chromosome, a Genomic Variation Enabler in Enterococci. mSphere US 3 2018 30404935 doi:10.1128/mSphere.00402-18 2379-5042 7p7q FULLOVERLAP Complex of PoxtA-EQ2 bound to the 70S ribosome from E. faecalis (initiation complex), state I. Complex of PoxtA-EQ2 bound to the 70S ribosome from E. faecalis (initiation complex), state I. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 45 46 47 48 49 50 51 52 53

Obtained by affinity purification of FLAG-tagged PoxtA.

PoxA 1 1

ARE-ABC-F family resistance factor PoxtA

Enterococcus faecalis 70S Ribosome 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 45 46 47 48 49 50 51 52 53

70S ribosome

Enterococcus faecalis ARE-ABC-F family resistance factor PoxtA Enterococcus faecalis 0.067890656 1 Enterococcus faecalis LEVO MRGQKMNLTFGLEEVYEDAEFHLGDFDKVGIVGVNGAGKTTLFRLLLRELKLDKGKITIGNSRIGYLPQEIIIMDEKMTV LEFLAEGRPIKKMETELNYIYEKLTVVDDDKQDRLLKRMGWLQEQLEYFDCYEAESILLDLVDSMQIDFDLFDQPISELS GGQKSKISFAKVLYSKPEILLLDQPTNHLDSSTKEFVTKYLKSYRGSVLIISHDIDFLNQIIDKIMYIDKVTHKISIYEG DYYTYKKKYSENQLLREKMIIQQEKEVKELATFVQKAKQASQTNHALKRMGLERAIRLDKKKKNLTKRDKVYKRVKMDIK PNREVARTPLKVENVTFHYPGHPILYKDLSFQISGKERFLVVGENGVGKSTLLKLLMGINIPDKGKIIFNDKTDVAYYSQ ELEQLDEEKTILENVKSDEYTDWKLRATLSNFLFYDDDVNKKVNVLSPGEKARIVLCKVLLQKANLLILDQPTNHLDPET QSIIGANFNLFEGTIIVVSHNPSFVEQIGINRMLILPSGNIDNYSPELLEYYSNLNMIKEIQVGHHHHHHAKGGENLYFQ GVADYKDHDGDYKDHDIDYKDDDDKG 50S ribosomal protein L29 Enterococcus faecalis 0.0073425619999999995 1 LEVO MKVKEIRELTTAEMLDKEKQLKEELFNLRFQLATGQLENTARIKEVRQSIARIKTVLREQAN Q839F6 50S ribosomal protein L30 Enterococcus faecalis 0.0063654689999999995 1 LEVO MAELKITLKRSVIGRPQNQRATVKALGLGKVNSTVTKPANEAIKGMVNTISHLVDVEEV Q839E6 50S ribosomal protein L31 type B Enterococcus faecalis 0.010138101 1 LEVO MKQDIHPNYQPVVFMDSTTGFKFLSGSTKGSSETVEWEDGNTYPLLRVEVTSDSHPFYTGRQKFTQADGRVDRFNKKYGL KDENANPDA Q836E3 50S ribosomal protein L32-3 Enterococcus faecalis 0.0065487589999999995 1 LEVO MAVPARRTSKAKKAKRRTHYKLTIKGLNACSNCGEMKKSHHVCPACGHYDGKDVMSKEA Q836R0 50S ribosomal protein L33 3 Enterococcus faecalis 0.006052027 1 LEVO MRVNITLECTSCKERNYLTNKNKRNNPDRLEKQKYCPRERKVTLHRETK P59628 50S ribosomal protein L34 Enterococcus faecalis 0.005373507 1 LEVO MKRTYQPNKRKRQKVHGFRKRMSTKNGRRVLASRRRKGRKVISA Q82YU9 50S ribosomal protein L35 Enterococcus faecalis 0.007727316 1 LEVO MPKQKTHRGLAKRVKRTGGGGLKRGRAFTSHRFHGKTKKQRRQLRKASMVAKGDYKRIRQQLARMK Q837C8 50S ribosomal protein L36 Enterococcus faecalis 0.0044405339999999995 1 LEVO MKVRPSVKPMCEHCKVIRRKGRVMVICPANPKHKQRQG Q839E1 23S rRNA Enterococcus faecalis 0.943422312 1 GGUUAAGUGAAUAAGGGCGCACGGUGGAUGCCUUGGCACUAGGAGCCGAUGAAGGACGGGACUAACACCGAUAUGCUUUG GGGAGCUGUAAGUAAGCUAUGAUCCAGAGAUUUCCGAAUGGGGGAACCCAAUAUCUUUUAUAGGAUAUUACUUUUCAGUG AAUACAUAGCUGAUUAGAGGUAGACGCAGAGAACUGAAACAUCUUAGUACCUGCAGGAAGAGAAAGAAAAUUCGAUUCCC UGAGUAGCGGCGAGCGAAACGGGAAGAGCCCAAACCAACAAGCUUGCUUGUUGGGGUUGUAGGACUCCGAUAUGGUAGUC UGUUAGUAUAGUUGAAGGAUUUGGAAAAUUCCGCUAAAGAGGGUGAAAGCCCCGUAGACGAAAUGCUGACAACACCUAGG AGGAUCCUGAGUACGGCGGAACACGAGAAAUUCCGUCGGAAUCCGCGGGGACCAUCCCGCAAGGCUAAAUACUCCCUAGU GACCGAUAGUGAACCAGUACCGUGAGGGAAAGGUGAAAAGCACCCCGGAAGGGGAGUGAAAUAGAUCCUGAAACCGUGUG CCUACAACAAGUCAAAGCUCGUUAAUGAGUGAUGGCGUGCCUUUUGUAGAAUGAACCGGCGAGUUACGAUUGCAUGCGAG GUUAAGUCGAAGAGACGGAGCCGCAGCGAAAGCGAGUCUGAAUAGGGCGAAUGAGUAUGUAGUCGUAGACCCGAAACCAU GUGAUCUACCCAUGUCCAGGUUGAAGGUGCGGUAAAACGCACUGGAGGACCGAACCCACGUACGUUGAAAAGUGCGGGGA UGAGGUGUGGGUAGCGGAGAAAUUCCAAACGAACUUGGAGAUAGCUGGUUCUCUCCGAAAUAGCUUUAGGGCUAGCCUCG GAAUUGAGAAUGAUGGAGGUAGAGCACUGUUUGGACUAGGGGCCCAUCUCGGGUUACCGAAUUCAGAUAAACUCCGAAUG CCAUUCAUUUAUAUCCGGGAGUCAGACUGCGAGUGAUAAGAUCCGUAGUCGAAAGGGAAACAGCCCAGACCACCAGCUAA GGUCCCAAAAUAUAUGUUAAGUGGAAAAGGAUGUGGGGUUGCACAGACAACUAGGAUGUUGGCUUAGAAGCAGCCACCAU UUAAAGAGUGCGUAAUAGCUCACUAGUCGAGUGACCCUGCGCCGAAAAUGUACCGGGGCUAAACAUAUUACCGAAGCUGU GGACUACACCAUUAGGUGUAGUGGUAGGAGAGCGUUCUAAGGGCGUUGAAGGUCGAUCGUGAGGACGGCUGGAGCGCUUA GAAGUGAGAAUGCCGGUAUGAGUAGCGAAAGACAGGUGAGAAUCCUGUCCACCGUAUGACUAAGGUUUCCUGGGGAAGGC UCGUCCGCCCAGGGUUAGUCGGGACCUAAGCCGAGGCCGAUAGGCGUAGGCGAUGGACAACAGGUUGAUAUUCCUGUACC AGUUGUUUUUGUUUGAGCAAUGGAGGGACGCAGUAGGCUAAGGAAUGCAUGCGAUUGGAAGUGCAUGUCCAAGCAAUGAG UCUUGAGUAGAGUUAAAUGCUUUACUCUUUAAGGACAAGUUGUGACGGGGAGCGAAAUAAUAGUAGCGAAGUUCCUGACG UCACACUGCCAAGAAAAGCUUCUAGUGAGAAAACAACUGCCCGUACCGUAAACCGACACAGGUAGUCGAGGAGAGUAUCC UAAGGUGAGCGAGCGAACUCUCGUUAAGGAACUCGGCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUGACUUCGGU CAGCCGCAGUGAAUAGGCCCAAGCGACUGUUUAUCAAAAACACAGGUCUCUGCAAAAUCGUAAGAUGAAGUAUAGGGGCU GACGCCUGCCCGGUGCUGGAAGGUUAAGAGGAUGGGUUAGCUUCGGCGAAGCUCAGAAUUGAAGCCCCAGUAAACGGCGG CCGUAACUAUAA(OMC)GGUCCUAAGGUAGCGAAA(5MU)UCCUUGUCGGGUAAGUUCCGACCCGCACGAAAGGCGUAAC GAUUUGGGCACUGUCUCAACGAGAGACUCGGUGAAAUUUUAGUACCUGUGAAGAUGCAGGUUACCCGCGACAGGACGGAA AGACCCCAUGGAGCUUUACUGUAGUUUGAUAUUGAGUGUUUGUACCACAUGUACAGGAUAGGUAGGAGCCGAUGAGACCG GAACGCUAGUUUCGGAGGAGGCGCUGGUGGGAUACUACCCUUGUGUUAUGAACCCUCUAACCCGCACCACUAAUCGUGGU GGGAGACAGUGUCAGAUGGGCAGUUUGACUG(OMG)GGCGGUCGCCUCCUAAAAGGUAACGGAGGCGCCCAAAGGUUCCC UCAGAAUGGUUGGAAAUCAUUCGAAGAGUGUAAAGGCAGAAGGGAGCUUGACUGCGAGACCUACAAGUCGAGCAGGGACG AAAGUCGGGCUUAGUGAUCCGGUGGUUCCGCAUGGAAGGGCCAUCGCUCAACGGAUAAAAGCUACCCUG(2MG)GGAUAA CAGGCUUAUCUCCCCCAAGAGUCCACAUCGACGGGGAGGUUUGGCACCUCGAUGUCGGCUCGUCGCAUCCUGGGGCUGUA GUCGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGCACGCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCC CUAUCCGUCGCGGGCGUUGGAAAUUUGAGAGGAGCUGUCCUUAGUACGAGAGGACCGGGAUGGACUUACCGCUGGUGUAC CAGUUGUUCUGCCAAGGGCAUUGCUGGGUAGCUAUGUAGGGAAGGGAUAAACGCUGAAAGCAUCUAAGUGUGAAGCCCAC CUCAAGAUGAGAUUUCCCAUUUCUUUAAGAAAGUAAGACCCCUGAGAGAUGAUCAGGUAGAUAGGUUGGAAGUGGAAGGC UAGUGAUAGUUGGAGCGGACCAAUACUAAUCGGUCGAGGACUUAAC 5S rRNA Enterococcus faecalis 0.037433188 1 UGUGGUGGCGAUAGCGAGAAGGAUACACCUGUUCCCAUGCCGAACACAGAAGUUAAGCUUCUUAGCGCCGAUUGUAGUGA AGGGUUUCCCUUUGUGAGAGUAGGACGUCGCCACGC CP002621.1 fMet-tRNA Enterococcus faecalis 0.024811794999999998 1 CGCGGGGUGGAGCAGUCAGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUAGGUUCAAAUCCUGCCCCCGCAACCA 50S ribosomal protein L1 Enterococcus faecalis 0.02449523 1 LEVO MAKKSKKMQEALKKVDATKAYSVEEAVALAKDTNIAKFDATVEVAYKLNVDPKKADQQIRGAVVLPNGTGKTQTVLVFAK GEKAKEAEAAGADFVGDDDMVAKIQGGWFDFDVVVATPDMMATVGKLGRVLGPKGLMPNPKTGTVTMDVTKAVEEVKAGK VTYRVDKAGNIHVPIGKVSFDNEKLVENFNTINDVLLKAKPSTAKGQYIKNISVTTTFGPGIHVDQASF Q830Q6 50S ribosomal protein L2 Enterococcus faecalis 0.030161828 1 LEVO MAIKKYKPTTNGRRNMTSSDFAEITTSTPEKSLLQPLKNNAGRNNNGRITVRHQGGGHKRQYRVIDFKRNKDNVAAVVKT IEYDPNRSANIALVHYEDGVKAYILAPKGLEVGMRLVSGPEADIKVGNALPLENIPVGTVIHNIEMKPGKGGQLIRSAGT SAQVLGKEGKYVLIRLNSGEVRMILATCRATIGSVGNEQHELINIGKAGRSRWMRKRPTVRGSVMNPNDHPHGGGEGKTP IGRKAPVSPWGQPAIGYKTRNKKAKSDKLIVRRRT Q839G1 50S ribosomal protein L3 Enterococcus faecalis 0.022758478999999998 1 LEVO MTKGILGKKVGMTQIFTESGELIPVTVVEATPNVVLQVKTVETDGYEAIQVGYQDKREVLSNKPAKGHVAKANTAPKRFI KEFKNVELGEYEVGKEIKVDVFQAGDVVDVTGTTKGKGFQGAIKRHGQSRGPMSHGSRYHRRPGSMGPVAPNRVFKNKRL AGRMGGDRVTIQNLEVVKVDVERNVILIKGNIPGAKKSLITIKSAVKAK Q839G4 50S ribosomal protein L4 Enterococcus faecalis 0.022549717 1 LEVO MPNVALFKQDGTQNGEITLNEEIFGIEPNESVVYDAIIMQRASLRQGTHAVKNRSAVRGGGRKPWRQKGTGRARQGSIRS PQWRGGGVVFGPTPRSYSYKFPKKVRRLAMKSVLSDKVAENNLVAVEGLSFDAPKTKEFKQVLANLSIDTKVLVVLENGN DFAALSARNLPNVSVVTSDNVSVLDVVSANKVLATQTALTQIEEVLA Q839G3 50S ribosomal protein L5 Enterococcus faecalis 0.02012349 1 LEVO MNRLKEKYIKEVTPSLVEKFNYSSVMQTPKVDKIVINMGVGDAVSNAKNLDKAVEELALITGQKPLITKAKKSIAGFRLR EGMPIGAKVTLRGERMYEFLDKLVTVSLPRVRDFHGVSKKAFDGRGNYTLGIKEQLIFPEVDYDLVDKVRGMDIVIVTTA NTDEESRELLAQLGMPFQK Q839F2 50S ribosomal protein L6 Enterococcus faecalis 0.019437303 1 LEVO MSRIGNKVVVLPAGVEIKQDGNNITVKGPKGELTREFSSDIKMNIEGNEVTFIRPNDSKEMKTIHGTTRANFNNMVVGVS EGFQKALELIGVGYRAQVQGNKLTLNVGYSHPVEMTAPEGVTFEVPANTQVIVKGINKEVVGELAANIRGVRPPEPYKGK GIRYVGEFVRRKEGKTGK Q839E9 50S ribosomal protein L13 Enterococcus faecalis 0.016325902 1 LEVO MRTTYMAKAGEVERKWYVVDATDVPLGRLSAVVASVLRGKNKPTFTPHVDTGDFVIVINADKVKLTGKKATDKIYYRHSM YPGGLKSVTAGELRDKNSRRLIETSVKGMLPKNTLGRKQFTKLNVYGGAEHPHAAQQPEVLDITNLI R3K7G5 50S ribosomal protein L14 Enterococcus faecalis 0.013165274999999999 1 LEVO MIQQESRLRVADNSGAREILTIKVLGGSGRKTANIGDVIVATVKQATPGGVVKKGEVVKAVIVRTKSGARRADGSYIKFD ENAAVIIRDDKSPRGTRIFGPVARELRENNFMKIVSLAPEVL Q839F4 50S ribosomal protein L15 Enterococcus faecalis 0.015602867999999999 1 LEVO MKLHELKPAEGSRQVRNRVGRGTSSGNGKTAGRGQKGQKARSGGGVRLGFEGGQTPLFRRLPKRGFTNINRKDYAVVNLD TLNRFEDGTEVTPVVLKEAGIVKNEKAGIKVLADGELTKKLTVKAAKFSKSAQEAIEAAGGSIEVI Q839E5 50S ribosomal protein L16 Enterococcus faecalis 0.016261168 1 LEVO MLVPKRVKHRREFRGKMRGEAKGGKEVAFGEWGLQATESHWITNRQIEAARIAMTRYMKRGGKVWIKIFPHKSYTSKAIG VRMGKGKGAPEGWVSPVKRGKIMFEIAGVPEEVAREALRLASHKLPVKTKIVKREEMGGESNEG Q839F7 50S ribosomal protein L17 Enterococcus faecalis 0.014503704 1 LEVO MSYRKLGRTSSQRKAMLRDITTDLIINERIVTTEARAKEVRSTVEKMITLGKRGDLHARRQAATFVRNEVASVREEDESI VVESALQKLFNDLGPRFAERQGGYTRILKTEPRRGDAAPMVVIEFVK Q839D8 50S ribosomal protein L18 Enterococcus faecalis 0.012937829 1 LEVO MITKPDKNKTRQKRHRRVRNKISGTAECPRLNIFRSNKNIYAQVIDDVAGVTLASASALDKEISGGTKTETAAAVGKLVA ERAAEKGIKKVVFDRGGYLYHGRVQALAEAARENGLEF Q839E8 50S ribosomal protein L19 Enterococcus faecalis 0.013244478999999998 1 LEVO MNPLIQELTQEQLRTDIPAFRPGDTVRVHAKVVEGTRERIQLFEGVVIKRRGAGISETYTVRKVSNGVGVERTFPLHTPR VAQIEVVRYGKVRRAKLYYLRALHGKAARIKEIRR Q833P5 50S ribosomal protein L20 Enterococcus faecalis 0.013674152 1 LEVO MARVKGGTVTRKRRKKVLKLAKGYYGSKHTLFKSAKEQVMNSYYYAFRDRRQKKRDFRKLWIARINAAARMNGLSYSKLM HGLKLAEIDINRKMLADLAVNDAAAFTALAEQAKDALSK Q837C7 50S ribosomal protein L21 Enterococcus faecalis 0.011166986 1 LEVO MYAIIKTGGKQVKVEVGQAIYVEKLNVEAGEKVVFDEVILVGGESTKVGAPTVAGATVEGTVEKHGKQKKVVTFQYKPKK HSHRKQGHRQPYTKVMIEAINA Q836X6 50S ribosomal protein L22 Enterococcus faecalis 0.012473464 1 LEVO MSEQITSAKATAKTVRTSPRKARLVIDLIRGKSVADAISILKFTPNKSAGIIEKVLMSAVANAENNFDLDVESLVVSEAF VNEGPTMKRFRPRAKGSASPINKRTSHITVVVTEK Q839F9 50S ribosomal protein L23 Enterococcus faecalis 0.011089021000000001 1 LEVO MELLDVIKRPVITEKSMLAMDEKKYTFEVDTRANKTLVKQAVESAFDVKVANVNILNVRPKFKRMGKYAGYTKKRRKAIV TLTEDSKEIQLFEAAE Q839G2 50S ribosomal protein L24 Enterococcus faecalis 0.011137062999999999 1 LEVO MFVKKGDKVKVITGKDKNKEGVVLAAFPKQDKVIVEGVNVVKKHQKPNQAAPQGGILEVEAPIHVSNVMVIDPSNGEATK VAFKEVDGKKVRVSKKTGEVLDK Q839F3 50S ribosomal protein L27 Enterococcus faecalis 0.010175571999999999 1 LEVO MLLTMNLQLFAHKKGGGSTSNGRDSESKRLGAKSADGQTVTGGSILYRQRGTKIYPGVNVGIGGDDTLFAKVDGVVRFER KGRDKKQVSVYPVAN Q836X4 50S ribosomal protein L28 Enterococcus faecalis 0.007005314 1 LEVO MAKVCYFTGRKTSSGNNRSHAMNSTKRTVKPNLQKVRVLIDGKPKKVWVSTRALKSGKIERV Q82ZE4 16S rRNA Enterococcus faecalis 0.50427875 1 GAGAGUUUGAUCCUGGCUCAGGACGAACGCUGGCGGCGUGCCUAAUACAUGCAAGUCGAACGCUUCUUUCCUCCCGAGUG CUUGCACUCAAUUGGAAAGAGGAGUGGCGGACGGGUGAGUAACACGUGGGUAACCUACCCAUCAGAGGGGGAUAACACUU GGAAACAGGUGCUAAUACCGCAUAACAGUUUAUGCCGCAUGGCAUAAGAGUGAAAGGCGCUGGCGGGUGUCGCUGAUGGA UGGACCCGCGGUGCAUUAGCUAGUUGGUGAGGUAACGGCUCACCAAGGCCACGAUGCAUAGCCGACCUGAGAGGGUGAUC GGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUAGGGAAUCUUCGGCAAUGGACGAAAGUCUG ACCGAGCAACGCCGCGUGAGUGAAGAAGGUUUUCGGAUCGUAAAACUCUGUUGUUAGAGAAGAACAAGGACGUUAGUAAC UGAACGUCCCCUGACGGUAUCUAACCAGAAAGCCACGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGUGGCAAG CGUUGUCCGGAUUUAUUGGGCGUAAAGCGAGCGCAGGCGGUUUCUUAAGUCUGAUGUGAAAGCCCCCGGCUCAACCGGGG AGGGUCAUUGGAAACUGGGAGACUUGAGUGCAGAAGAGGAGAGUGGAAUUCCAUGUGUAGCGGUGAAAUGCGUAGAUAUA UGGAGGAACACCAGUGGCGAAGGCGGCUCUCUGGUCUGUAACUGACGCUGAGGCUCGAAAGCGUGGGGAGCAAACAGGAU UAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAGUGCUAAGUGUUGGAGGGUUUCCGCCCUUCAGUGCUGCAGCAAACG CAUUAAGCACUCCGCCUGGGGAGUACGACCGCAAGGUUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAG CAUGUGGUUUAAUUCGAAGCAACGCGAAGAACCUUACCAGGUCUUGACAUCCUUUGACCACUCUAGAGAUAGAGCUUUCC CUUCGGGGACAAAGUGACAGGUGGUGCAUGGUUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGC GCAACCCUUAUUGUUAGUUGCCAUCAUUUAGUUGGGCACUCUAGCGAGACUGCCGGUGACAAACCGGAGGAAGGUGGGGA UGACGUCAAAUCAUCAUGCCCCUUAUGACCUGGGCUACACACGUGCUACAAUGGGAAGUACAACGAGUCGCUAGACCGCG AGGUCAUGCAAAUCUCUUAAAGCUUCUCUCAGUUCGGAUUGCAGGCUGCAACUCGCCUGCAUGAAGCCGGAAUCGCUAGU AAUCGCGGAUCAGCACGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCACGAGAGUUUGUAACA CCCGAAGUCGGUGAGGUAACCUUUUUGGAGCCAGCCGCCUAAGGUGGGAUAGAUGAUUGGGGUGAAGUCGUAACAAGGUA GCCGUAUCGG(MA6)(MA6)GGUGCGGCUGGAUCACCUCCUCCUCC mRNA Enterococcus faecalis 0.00621985

Sequence unknown. Likely a mix of many different mRNAs.

1 GGAGGUAAAAAAAUGACAA 30S ribosomal protein S2 Enterococcus faecalis 0.029500634999999997 1 LEVO MAVISMKQLLEAGVHFGHQTRRWNPKMKKYIFTERNGIYIIDLQKTVKLVDAAYDYMKNVAEEGGVALFVGTKKQAQEAI KDEAIRAGQYYVNHRWLGGTLTNWDTIQKRIARLKKINAMEEDGTFEVLPKKEVAGLNKERERLEKFLGGIADMPRIPDV MYIVDPRKERIAVQEAHKLNIPIVAMVDTNCDPDEIDVVIPSNDDAIRAVKLITAKMADAFIEGNQGEDQATEELFVEET PEATSIEEIVDVVEGNNESAE Q831U9 30S ribosomal protein S3 Enterococcus faecalis 0.024415184 1 LEVO MGQKVHPIGMRVGIIRDWDAKWYAEKEYAEFLHEDLRIRKFIATKLADAAVSTIEIERAANRVNISIHTAKPGMVIGKGG SEVENLRKELNKLTGKRVHINIVEIKKPDLDAKLVGEGIARQLENRVAFRRAQKQAIQRAMRAGAKGIKTQVSGRLNGAD IARSEGYSEGTVPLHTLRADIDYAWEEADTTYGKLGVKVWIYRGEILPTKKNTEKGGK Q839F8 30S ribosomal protein S4 Enterococcus faecalis 0.023273652 1 LEVO MSRYTGPSWKVSRRLGISLSGTGKELARRPYKPGQHGPNSRGKVSEYGMQLTEKQKLRHMYGMNERQFRTLFIKASKIKE GKHGVNFMVLLEQRLDNVVYRLGLATTRRQARQLVNHGHITVDGKRVDIPSYHVEVGQVIGVREKSQNISTIKEAVEATV GRPAFVSFDTEKLEGSFTRLPERDELYPEIDEALVVEYYNQKL Q82ZI6 30S ribosomal protein S5 Enterococcus faecalis 0.017444357 1 LEVO MVYIDPKHLELEDRVVAINRVTKVVKGGRRLRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLVEVPMVGST IPHEVIGVFGGGRILMKPAVEGSGVAAGGPVRAVLELAGVADITSKSLGSNTPINVVRATVEGLKQLKRAEEVAALRGKS VEEIIG Q839E7 30S ribosomal protein S6 Enterococcus faecalis 0.011621188 1 LEVO MSQDTKYEIMYIIRPNIDEEAKTALVERFDTILKDNGAEVIESKDWEKRRLAYEMNGFREGIYHIVNVTSPSTAGAINEF DRLAKINDDIIRHMIVKVEA Q839Z0 30S ribosomal protein S7 Enterococcus faecalis 0.017864625 1 LEVO MPRKGPVAKRDVLPDPIYNSKLVTRLINRVMVDGKRGIAANIIYNSFDIIKESTGNDPLEVFEQAMKNVMPVLEVKARRV GGSNYQVPVEVRPERRTTLGLRWVVNYARLRGEHTMEERLAKEIMDAANNTGASVKKREDTHKMADANRAFAHYRW Q839H0 30S ribosomal protein S8 Enterococcus faecalis 0.014936396 1 LEVO MVMTDPIADFLTRIRNANMVKHETLEVPASKIKRDIAEILKREGFIRDVEYIEDDKQGVIRVFLKYGKNEERVITNLKRI SKPGLRAYVKADEVPKVLNGLGIAIISTSEGVITDKEARAKNIGGEVIAYVW Q839F0 30S ribosomal protein S9 Enterococcus faecalis 0.01427148 1 LEVO MAQVQYSGTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLREVINQPFGVTETKGAYDVIVNVNGGGYAGQSGAIR HGIARALLQVDPDFRSALKRAGLLTRDARMVERKKPGLKKARKASQFSKR Q82Z47 30S ribosomal protein S10 Enterococcus faecalis 0.011731739 1 LEVO MAKQKIRIRLKAYEHRILDQSADKIVETAKRTGADVSGPIPLPTERSLYTVIRATHKYKDSREQFEMRTHKRLIDIVNPT PKTVDALMKLDLPSGVNIEIKL Q839G5 30S ribosomal protein S11 Enterococcus faecalis 0.013740897 1 LEVO MAAKKVSRKRRVKKNIESGVAHIHSTFNNTIVMITDTHGNALAWSSAGSLGFKGSKKSTPFAAQMAAEAATKVAMEHGLK TVDVTVKGPGSGREAAIRSLQATGLEVTAIRDVTPVPH(IAS)GCRPPKRRRV Q839E0 30S ribosomal protein S12 Enterococcus faecalis 0.015309816999999998 1 LEVO MPTINQLVRKPRKSKVEKSDSPALNKGYNSFKKTQTNVNSPQKRGVCTRVGTMTPKKPNSALRKYARVRLSNLIEVTAYI PGIGHNLQEHSVVLLRGGRVKDLPGVRYHIVRGALDTAGVNDRKQSRSKYGTKRPKA Q839H1 30S ribosomal protein S13 Enterococcus faecalis 0.013595773999999998 1 LEVO MARIAGVDIPRDKRVVVSLTYIYGIGNTTAKKVLANVGVSEDVRVRDLTNEQTDAIRAEIDKLKVEGDLRREVNLNIKRL MEIGSYRGIRHRRGLPTRGQNTKNNARTRKGPTKTVAGKKK P59754 30S ribosomal protein S14 type Z Enterococcus faecalis 0.007172593 1 LEVO MAKKSMIAKNKRPAKHSTQAYTRCERCGRPHSVYRKFHLCRICFRELAYKGQIPGVKKASW Q839F1 30S ribosomal protein S15 Enterococcus faecalis 0.010668236000000001 1 LEVO MAISQERKNEIIKEYARHEGDTGSPEVQIAVLTEDINQLNEHARTHKKDHHSYRGLMKKIGHRRNLLAYLRKTDIQRYRE LIQRLGLRR Q82ZJ1 30S ribosomal protein S16 Enterococcus faecalis 0.01035615 1 LEVO MAVKIRLKRMGSKKSPFYRIVVADSRSPRDGRFIETVGTYNPLKDPAEVVLKEDLVLDWLSKGAQPSDTVRNILSKEGVM KKHHEAKNVKK Q834F9 30S ribosomal protein S17 Enterococcus faecalis 0.0103321 1 LEVO MTEERNQRKVYQGRVVSDKMDKTITVVVETKKNHPIYGKRMKYSKKYKAHDENNTAKVGDIVKIMETRPLSATKRFRLLE VVEEAVII Q839F5 30S ribosomal protein S18 Enterococcus faecalis 0.009262890999999999 1 LEVO MAQQRRGGRKRRKVDYIAANHIEYIDYKDTELLKRFISERGKILPRRVTGTGAKNQRKLTIAIKRARIMGLLPFVSDEQ Q839Y8 30S ribosomal protein S19 Enterococcus faecalis 0.010586332 1 LEVO MGRSLKKGPFVDDHLMKKVEAQQGAEKKKVIKTWSRRSTIFPSFVGFTIAVYDGRKHVPVYIQEDMVGHKLGEFAPTRTY RGHVADDKKTKR Q839G0 30S ribosomal protein S20 Enterococcus faecalis 0.008972319999999999 1 LEVO MPNIESAIKRVRTSANANAKNSSQTNAMRTAIKKFEEAVAAGADNVDALYNEAVKAVDMAATKGLIHKNKANRDKIRLSK LAK Q831Q7 ADENOSINE-5'-TRIPHOSPHATE 0.000507181 2 ATP MAGNESIUM ION 2.4305e-05 196 MG POTASSIUM ION 3.9098e-05 153 K ZINC ION 6.5409e-05 4 ZN 1,4-DIAMINOBUTANE 8.815099999999999e-05 3 PUT SPECTINOMYCIN 0.00033235000000000003 1 SCM water 1.8015e-05 3601 HOH singleParticle particle 9.0 Quantifoil R2/2 COPPER 300 CARBON CONTINUOUS 2.0 ETHANE 100 278 FEI VITROBOT MARK II

Grid was prepared by four applications of elution fraction from affinity purification.

FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 70.0 2.7 0.5 1.5 165000.0 GATAN K2 QUANTUM (4k x 4k) 3838 3710 1-40 1 3639 5.0 30.255 1 203231 Initial model generated with RELION. 2 2.4 FSC 0.143 CUT-OFF RELION 3.1 112877 RANDOM ASSIGNMENT MAXIMUM LIKELIHOOD RELION 3.1 6 RELION 3.1 emd_13241.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 420 420 420 0 0 0 420 420 420 344.4 344.4 344.4 90.0 90.0 90.0 X Y Z -0.015773524 0.087937884 0.00052956253 0.003905023 0.82 0.82 0.82 0.022 AUTHOR ::::EMDATABANK.org::::EMD-13241:::: PoxtA bound to 70S ribosome from E. faecalis, high-resolution combined volume. Half-map. emd_13241_additional_7.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 420 420 420 0 0 0 420 420 420 344.4 344.4 344.4 90.0 90.0 90.0 X Y Z -0.039594624 0.11356766 0.000050562525 0.0011756197 0.82 0.82 0.82 AUTHOR ::::EMDATABANK.org::::EMD-13241:::: PoxtA bound to 70S ribosome from E. faecalis, high-resolution combined volume. Central protuberance volume from multibody refinement. Sharpened map. emd_13241_additional_6.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 420 420 420 0 0 0 420 420 420 344.4 344.4 344.4 90.0 90.0 90.0 X Y Z -0.08424646 0.23150115 0.0009485124 0.006452929 0.82 0.82 0.82 AUTHOR ::::EMDATABANK.org::::EMD-13241:::: PoxtA bound to 70S ribosome from E. faecalis, high-resolution combined volume. Small subunit head from multibody refinement. Sharpened map. emd_13241_additional_5.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 420 420 420 0 0 0 420 420 420 344.4 344.4 344.4 90.0 90.0 90.0 X Y Z -0.05136648 0.13301314 0.00011371634 0.0020091701 0.82 0.82 0.82 AUTHOR ::::EMDATABANK.org::::EMD-13241:::: PoxtA bound to 70S ribosome from E. faecalis, high-resolution combined volume. Small subunit head from multibody refinement. Sharpened map. emd_13241_additional_4.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 420 420 420 0 0 0 420 420 420 344.4 344.4 344.4 90.0 90.0 90.0 X Y Z -0.025534617 0.0751047 0.000049856277 0.0008735896 0.82 0.82 0.82 AUTHOR ::::EMDATABANK.org::::EMD-13241:::: PoxtA bound to 70S ribosome from E. faecalis, high-resolution combined volume. E-site volume from multibody refinement. Sharpened map. emd_13241_additional_3.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 420 420 420 0 0 0 420 420 420 344.4 344.4 344.4 90.0 90.0 90.0 X Y Z -0.060517967 0.18054701 0.00023540155 0.0029830658 0.82 0.82 0.82 AUTHOR ::::EMDATABANK.org::::EMD-13241:::: PoxtA bound to 70S ribosome from E. faecalis, high-resolution combined volume. Small subunit body from multibody refinement. Sharpened map. emd_13241_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 420 420 420 0 0 0 420 420 420 386.4 386.4 386.4 90.0 90.0 90.0 X Y Z -0.085492216 0.22342275 0.0005245817 0.005483379 0.91999996 0.91999996 0.91999996 AUTHOR ::::EMDATABANK.org::::EMD-13241:::: PoxtA bound to 70S ribosome from E. faecalis, high-resolution combined volume. Large-subunit from multibody refinement. Sharpened map. emd_13241_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 420 420 420 0 0 0 420 420 420 344.4 344.4 344.4 90.0 90.0 90.0 X Y Z -0.08424646 0.23150115 0.0009485124 0.006452929 0.82 0.82 0.82 AUTHOR ::::EMDATABANK.org::::EMD-13241:::: PoxtA bound to 70S ribosome from E. faecalis, high-resolution combined volume. Sharpened map. emd_13241_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 420 420 420 0 0 0 420 420 420 344.4 344.4 344.4 90.0 90.0 90.0 X Y Z -0.041055318 0.12131153 0.00051172555 0.0068797334 0.82 0.82 0.82 AUTHOR ::::EMDATABANK.org::::EMD-13241:::: PoxtA bound to 70S ribosome from E. faecalis, high-resolution combined volume. Small subunit head from multibody refinement. Sharpened map. emd_13241_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 420 420 420 0 0 0 420 420 420 344.4 344.4 344.4 90.0 90.0 90.0 X Y Z -0.04482328 0.12769887 0.0005127765 0.0068925754 0.82 0.82 0.82 AUTHOR ::::EMDATABANK.org::::EMD-13241:::: PoxtA bound to 70S ribosome from E. faecalis, high-resolution combined volume. Half-map.