2024-07-17 REL PDBe PDBe PDBe 2021-07-15 2022-09-21 2022-09-21 2024-07-17 Not funded 25541 Austria Complex I from E. coli, DDM/LMNG-purified, under Turnover at pH 6, Open state Kravchuk V Kampjut D Sazanov L Complex I, NADH, Quinone, PROTON TRANSPORT Kravchuk V Petrova O Kampjut D Wojciechowska-Bason A Breese Z Sazanov L A universal coupling mechanism of respiratory complex I. Nature UK 609 808 814 2022 36104567 doi:10.1038/s41586-022-05199-7 1476-4687 0006 NATUAS EMD-13214 other EM volume EMD-13215 other EM volume EMD-13216 other EM volume EMD-13222 other EM volume EMD-13235 other EM volume EMD-13236 other EM volume EMD-13237 other EM volume EMD-13238 other EM volume EMD-13239 other EM volume EMD-13240 other EM volume 7p64 FULLOVERLAP Complex I Complex I 0 1 2 3 4 5 6 7 8 10 11 12 13 Escherichia coli BL21-DE3 NADH-quinone oxidoreductase subunit F Escherichia coli BL21(DE3) DE3 0.048505336 1 LEVO IIRTPETHPLTWRLRDDKQPVWLDEYRSKNGYEGARKALTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMN IRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGT GFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGAWGKPTCVNNVETLCNVPAILANGVEWYQNISKSK DAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGLKFKAWQPGGAGTDFLTEAHLDLPMEFESIGKAGSRLGT ALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPG AVEPLQSAIKYFREEFEAGIKQPFSNTHLINGIQPNLLK A0A140N9Z7 7.1.1.- NADH dehydrogenase I subunit E Escherichia coli BL21(DE3) DE3 0.01738977 1 LEVO AFELSAAEREAIEHEMHHYEDPRAASIEALKIVQKQRGWVPDGAIHAIADVLGIPASDVEGVATFYSQIFRQPVGRHVIR YCDSVVCHINGYQGIQAALEKKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERYK A0A140N9K4 NADH-quinone oxidoreductase Escherichia coli BL21(DE3) DE3 0.099961672 1 LEVO ATIHVDGKEYEVNGADNLLEACLSLGLDIPYFCWHPALGSVGACRQCAVKQYQNAEDTRGRLVMSCMTPASDGTFISIDD EEAKQFRESVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRYY KDYAGGTDLGVYGAHDNVYFGRPEDGTLESEFSGNLVEICPTGVFTDKTHSERYNRKWDMQFAPSICQQCSIGCNISPGE RYGELRRIENRYNGTVNHYFLCDRGRFGYGYVNLKDRPRQPVQRRGDDFITLNAEQAMQGAADILRQSKKVIGIGSPRAS VESNFALRELVGEENFYTGIAHGEQERLQLALKVLREGGIYTPALREIESYDAVLVLGEDVTQTGARVALAVRQAVKGKA REMAAAQKVADWQIAAILNIGQRAKHPLFVTNVDDTRLDDIAAWTYRAPVEDQARLGFAIAHALDNSAPAVDGIEPELQS KIDVIVQALAGAKKPLIISGTNAGSLEVIQAAANVAKALKGRGADVGITMIARSVNSMGLGIMGGGSLEEALTELETGRA DAVVVLENDLHRHASATRVNAALAKAPLVMVVDHQRTAIMENAHLVLSAASFAESDGTVINNEGRAQRFFQVYDPAYYDS KTVMLESWRWLHSLHSTLLSREVDWTQLDHVIDAVVAKIPELAGIKDAAPDATFRIRGQKLAREPHRYSGRTAMRANISV HEPRQPQDIDTMFTFSMEGNNQPTAHRSQVPFAWAPGWNSPQAWNKFQDEVGGKLRFGDPGVRLFETSENGLDYFTSVPA RFQPQDGKWRIAPYYHLFGSDELSQRAPVFQSRMPQPYIKLNPADAAKLGVNAGTRVSFSYDGNTVTLPVEIAEGLTAGQ VGLPMGMSGIAPVLAGAHLEDLKEA A0A140N9P3 7.1.1.- NADH-quinone oxidoreductase subunit C/D Escherichia coli BL21(DE3) B / BL21-DE3 0.0688105 1 LEVO MVNNMTDLTAQEPAWQTRDHLDDPVIGELRNRFGPDAFTVQATRTGVPVVWIKREQLLEVGDFLKKLPKPYVMLFDLHGM DERLRTHREGLPAADFSVFYHLISIDRNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMM PQTWKGHPLRKDYPARATEFSPFELTKAKQDLEMEALTFKPEEWGMKRGTENEDFMFLNLGPNHPSAHGAFRIVLQLDGE EIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHL LYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLASYEKAALQ NTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYENFDFEIPVGGGVSDCYTRVMLKVEELRQSLRI LEQCLNNMPEGPFKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTR IRTPSYAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR A0A140N745 7.1.1.- NADH-quinone oxidoreductase subunit B Escherichia coli BL21(DE3) B / BL21-DE3 0.025081809 1 LEVO MDYTLTRIDPNGENDRYPLQKQEIVTDPLEQEVNKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVAR FGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDIYSVVQGVDKFIPVDVYIPGCPP RPEAYMQALMLLQESIGKERRPLSWVVGDQGVYRANMQSERERKRGERIAVTNLRTPDEI A0A140N560 7.1.1.- NADH-quinone oxidoreductase subunit I Escherichia coli BL21(DE3) DE3 0.020562771 1 LEVO MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGEERCVACNLCAVACPVGCISLQKA ETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEYKRQDLVYEKEDLLISGPGKYPEYNFYRMAGMAIDG KDKGEAENEAKPIDVKSLLP A0A140N885 7.1.1.- NADH-quinone oxidoreductase subunit H Escherichia coli BL21(DE3) B / BL21-DE3 0.036240921999999995 1 LEVO MSWISPELIEILLTILKAVVILLVVVTCGAFMSFGERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDR VIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFL GLSLMGVVAQAGSFNMTDIVNSQAHVWNVIPQFFGFITFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVG EYIGIVTISALMVTLFFGGWQGPLLPPFIWFALKTAFFMMMFILIRASLPRPRYDQVMSFGWKICLPLTLINLLVTAAVI LWQAQ A0A140N5X6 7.1.1.- NADH-quinone oxidoreductase subunit A Escherichia coli BL21(DE3) B / BL21-DE3 0.016474283 1 LEVO MSMSTSTEVIAHHWAFAIFLIVAIGLCCLMLVGGWFLGGRARARSKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDV EALYLFAWSTSIRESGWVGFVEAAIFIFVLLAGLVYLVRIGALDWTPARSRRERMNPETNSIANRQR A0A140N7N4 7.1.1.- Proton-translocating NADH-quinone oxidoreductase, chain L Escherichia coli BL21(DE3) DE3 0.066513633 1 LEVO MNMLALTIILPLIGFVLLAFSRGRWSENVSAIVGVGSVGLAALVTAFIGVDFFANGEQTYSQPLWTWMSVGDFNIGFNLV LDGLSLTMLSVVTGVGFLIHMYASWYMRGEEGYSRFFAYTNLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGFYYTD PKNGAAAMKAFVVTRVGDVFLAFALFILYNELGTLNFREMVELAPAHFADGNNMLMWATLMLLGGAVGKSAQLPLQTWLA DAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMF LALGVQAWDAAIFHLMTHAFFKALLFLASGSVILACHHEQNIFKMGGLRKSIPLVYLCFLVGGAALSALPLVTAGFFSKD EILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVFHGKEQIHAHAVKGVTHSLPLIVLLILSTFVGALIVPPLQGVLP QTTELAHGSMLTLEITSGVVAVVGILLAAWLWLGKRTLVTSIANSAPGRLLSTWWYNAWGFDWLYDKVFVKPFLGIAWLL KRDPLNSMMNIPAVLSRFAGKGLLLSENGYLRWYVASMSIGAVVVLALLMVLR A0A140N7P6 NADH dehydrogenase I subunit M Escherichia coli BL21(DE3) DE3 0.056002473 1 LEVO MLLPWLILIPFIGGFLCWQTERFGVKVPRWIALITMGLTLALSLQLWLQGGYSLTQSAGIPQWQSEFDMPWIPRFGISIH LAIDGLSLLMVVLTGLLGVLAVLCSWKEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHK ASDGKTRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGVEYLLMLGFFIAFAVKMPVVPL HGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSV SHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPG TGNFVGEFMILFGSFQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLRELFMILLLVVLLVLLGF YPQPILDTSHSAIGNIQQWFVNSV A0A140N571 NADH-quinone oxidoreductase subunit N Escherichia coli BL21(DE3) DE3 0.05207267199999999 1 LEVO MTITPQNLIALLPLLIVGLTVVVVMLSIAWRRNHFLNATLSVIGLNAALVSLWFVGQAGAMDVTPLMRVDGFAMLYTGLV LLASLATCTFAYPWLEGYNDNKDEFYLLVLIAALGGILLANANHLASLFLGIELISLPLFGLVGYAFRQKRSLEASIKYT ILSAAASSFLLFGMALVYAQSGDLSFVALGKNLGDGMLNEPLLLAGFGLMIVGLGFKLSLVPFHLWTPDVYQGAPAPVST FLATASKIAIFGVVMRLFLYAPVGDSEAIRVVLAIIAFASIIFGNLMALSQTNIKRLLGYSSISHLGYLLVALIALQTGE MSMEAVGVYLAGYLFSSLGAFGVVSLMSSPYRGPDADSLFSYRGLFWHRPILAAVMTVMMLSLAGIPMTLGFIGKFYVLA VGVQAHLWWLVGAVVVGSAIGLYYYLRVAVSLYLHAPEQPGRDAPSNWQYSAGGIVVLISALLVLVLGVWPQPLISIVRL AMPLM A0A140N755 7.1.1.- NADH-quinone oxidoreductase subunit K Escherichia coli BL21(DE3) DE3 0.010852961 1 LEVO MIPLQHGLILAAILFVLGLTGLVIRRNLLFMLIGLEIMINASALAFVVAGSYWGQTDGQVMYILAISLAAAEASIGLALL LQLHRRRQNLNIDSVSEMRG C5W716 7.1.1.- NADH-quinone oxidoreductase subunit J Escherichia coli BL21(DE3) DE3 0.017402824 1 LEVO MEFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAGAIMVLFVFVVMMLNLGGSE IEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQGIDGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGR EE A0A140N7W8 7.1.1.- IRON/SULFUR CLUSTER 0.00035163999999999996 7 SF4 FLAVIN MONONUCLEOTIDE 0.00045634399999999997 1 FMN 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE 0.000665441 1 NAI FE2/S2 (INORGANIC) CLUSTER 0.00017581999999999998 2 FES CALCIUM ION 4.0078e-05 1 CA 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione 0.000322439 1 DCQ 1,2-Distearoyl-sn-glycerophosphoethanolamine 0.000748065 18 3PE EICOSANE 0.000282547 5 LFA water 1.8015e-05 987 HOH singleParticle particle 0.16 6.0 20.0 C6H13NO4S MES 2.0 CaCl2 calcium chloride 250.0 NaCl sodium chloride 0.01 C47H88O22 LMNG 0.25 C40H80NO8P E. coli lipid extract 0.1 C32H58N2O7S CHAPS 1.2 C21H27N7O14P2 NADH 0.41 C19H30O4 DQ Quantifoil R0.6/1 COPPER CARBON CONTINUOUS 1.3 ETHANE 100 288 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 100.0 2.7 1.0 2.0 81000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K3 (6k x 4k) 1 2757 78.0 1 773484 4HEA 2 C1 FOURIER SPACE 2.5 FSC 0.143 CUT-OFF RELION 97923 MAXIMUM LIKELIHOOD RELION MAXIMUM LIKELIHOOD RELION emd_13217.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 480 421 315 0 0 0 315 421 480 157.5 210.5 240.0 90.0 90.0 90.0 Z Y X -0.088361055 0.5901448 0.0046195667 0.021526035 0.5 0.5 0.5 0.05 AUTHOR 4HEA PDB experimental model 3RKO PDB experimental model FLEXIBLE FIT ML REAL emd_13217_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 504 504 504 0 0 0 504 504 504 534.24 534.24 534.24 90.0 90.0 90.0 X Y Z -0.20450267 0.5790701 -0.000028061844 0.0048688985 1.06 1.06 1.06 AUTHOR Turnover Open PA focused map emd_13217_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 504 504 504 0 0 0 504 504 504 534.24 534.24 534.24 90.0 90.0 90.0 X Y Z -0.15608461 0.34797305 -0.000025185736 0.004238801 1.06 1.06 1.06 AUTHOR Turnover Open MD focused map