<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-1318" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2007-01-30</deposition>
         <header_release>2007-02-05</header_release>
         <map_release>2008-02-05</map_release>
         <update>2011-05-26</update>
      </key_dates>
      <title>Three-dimensional structure of the respiratory chain supercomplex I1III2IV1 from bovine heart mitochondria.</title>
      <authors_list>
         <author>Schafer E</author>
         <author>Dencher NA</author>
         <author>Vonck J</author>
         <author>Parcej DN</author>
      </authors_list>
      <keywords>
         </keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Schafer E</author>
               <author order="2">Dencher NA</author>
               <author order="3">Vonck J</author>
               <author order="4">Parcej DN</author>
               <title>Three-dimensional structure of the respiratory chain supercomplex I1III2IV1 from bovine heart mitochondria.</title>
               <journal>BIOCHEMISTRY</journal>
               <volume>46</volume>
               <first_page>12579</first_page>
               <last_page>12585</last_page>
               <year>2007</year>
               <external_references type="PUBMED">17927210</external_references>
               <external_references type="DOI">doi:10.1021/bi700983h</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>bovine supercomplex I1III2IV1</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>bovine supercomplex I1III2IV1</name>
            <details>membranes are solubilised in digitonin, monodisperse sample</details>
            <number_unique_components>3</number_unique_components>
            <molecular_weight>
               <experimental units="MDa">1.7</experimental>
               <theoretical units="MDa">1.7</theoretical>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name>complex I</name>
            <natural_source database="NCBI">
               <organism ncbi="9913">Bos taurus</organism>
               <tissue>heart</tissue>
               <cell>heart</cell>
               <organelle>mitochondria</organelle>
               <cellular_location>inner mitochondrial membrane</cellular_location>
            </natural_source>
            <number_of_copies>1</number_of_copies>
            <oligomeric_state>monomer</oligomeric_state>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="2">
            <name>complex III</name>
            <natural_source database="NCBI">
               <organism ncbi="9913">Bos taurus</organism>
               <tissue>heart</tissue>
               <cell>heart</cell>
               <organelle>mitochondria</organelle>
               <cellular_location>inner mitochondrial membrane</cellular_location>
            </natural_source>
            <number_of_copies>2</number_of_copies>
            <oligomeric_state>dimer</oligomeric_state>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="3">
            <name>complex IV</name>
            <natural_source database="NCBI">
               <organism ncbi="9913">Bos taurus</organism>
               <tissue>heart</tissue>
               <cell>heart</cell>
               <organelle>mitochondria</organelle>
               <cellular_location>inner mitochondrial membrane</cellular_location>
            </natural_source>
            <number_of_copies>1</number_of_copies>
            <oligomeric_state>monomer</oligomeric_state>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">0.4</concentration>
               <buffer>
                  <ph>7.1</ph>
                  <details>0.1 % (w/v) digitonin, 25 mM tricine, 7.5 mM
          bis-tris,       25 mM       aminocaproic acid, 10 % (w/v) glycerol</details>
               </buffer>
               <staining>
                  <type>NEGATIVE</type>
                  <details>2 % (w/v) ammonium molybdate, deep stain method</details>
               </staining>
               <grid>
                  <details>400 mesh Cu grid</details>
               </grid>
               <vitrification>
                  <cryogen_name>NONE</cryogen_name>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI/PHILIPS CM120T</microscope>
               <illumination_mode>OTHER</illumination_mode>
               <imaging_mode>OTHER</imaging_mode>
               <electron_source>LAB6</electron_source>
               <acceleration_voltage units="kV">120</acceleration_voltage>
               <nominal_defocus_min units="&#181;m">0.5</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">3.5</nominal_defocus_max>
               <nominal_magnification>45000.0</nominal_magnification>
               <specimen_holder_model>OTHER</specimen_holder_model>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                     <digitization_details>
                        <scanner>ZEISS SCAI</scanner>
                     </digitization_details>
                     <number_real_images>20</number_real_images>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>n.a</specimen_holder>
               <tilt_angle_min>0</tilt_angle_min>
               <tilt_angle_max>50</tilt_angle_max>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <details>particles were selected manually</details>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">32.0</resolution>
               <resolution_method>FSC 3 SIGMA CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>SPIDER</name>
                  </software>
               </software_list>
               <details>final maps calculated from two</details>
               <number_images_used>1023</number_images_used>
            </final_reconstruction>
            <final_two_d_classification>
               <number_classes>3</number_classes>
            </final_two_d_classification>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="8193">
      <file>emd_1318.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>128</col>
         <row>128</row>
         <sec>128</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>128</x>
         <y>128</y>
         <z>128</z>
      </spacing>
      <cell>
         <a units="&#8491;">597.376</a>
         <b units="&#8491;">597.376</b>
         <c units="&#8491;">597.376</c>
         <alpha units="deg">90</alpha>
         <beta units="deg">90</beta>
         <gamma units="deg">90</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.000237242</minimum>
         <maximum>0.00625119</maximum>
         <average>0.000906469</average>
         <std>0.000516844</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">4.667</x>
         <y units="&#8491;">4.667</y>
         <z units="&#8491;">4.667</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.003</level>
         </contour>
      </contour_list>
      <annotation_details>This is a side view along the mitochondiral
      membrane plane</annotation_details>
      <details>::::EMDATABANK.org::::EMD-1318::::</details>
   </map>
   <interpretation>
      <modelling_list>
         <modelling>
            <details>The complexes were fitted by hand in Chimera</details>
         </modelling>
      </modelling_list>
   </interpretation>
</emd>