2024-07-17 REL PDBe PDBe PDBe 2021-07-06 2022-02-02 2022-02-02 2024-07-17 Wellcome Trust WT110068/Z/15/Z United Kingdom F1Fo-ATP synthase from Acinetobacter baumannii (state 1) Demmer JK Phillips BP ATP synthase, ESKAPE, Rotary ATP synthase, F1Fo, peptidisc, bioenergetics, IMP, multi-drug resistance, pathogenic, MEMBRANE PROTEIN Demmer JK Phillips BP Uhrig OL Filloux A Allsopp LP Bublitz M Meier T Structure of ATP synthase from ESKAPE pathogen Acinetobacter baumannii. Sci Adv US 8 eabl5966 eabl5966 2022 35171679 doi:10.1126/sciadv.abl5966 2375-2548 7p2y FULLOVERLAP F1Fo ATP synthase F1Fo ATP synthase 0 1 2 3 4 5 6 7 8
State 1 of F1Fo ATP synthase from ESKAPE pathogen Acinetobacter baumannii
Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377)Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) ATCC 17978 Cell membrane 0.528 ATP synthase subunit alpha Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377 0.055452906 3 LEVO MQQLNPSEISALIKQRIGDLDTSATAKNEGTIVMVSDGIVRIHGLADAMYGEMIEFDGGLFGMALNLEQDSVGAVVLGNY LSLQEGQKARCTGRVLEVPVGPELLGRVVDALGNPIDGKGPIDAKLTDAVEKVAPGVIWRQSVDQPVQTGYKSVDTMIPV GRGQRELIIGDRQTGKTAMAIDAIIAQKNSGIKCVYVAIGQKQSTIANVVRKLEETGAMAYTTVVAAAAADPAAMQYLAP YSGCTMGEYFRDRGEDALIIYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERASRVSAEYVEKFTNGAVTG KTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETSLFNAGIRPAVNAGISVSRVGGSAQTKIIKKLSGGIRTALAQ YRELAAFAQFASDLDEATRKQLEHGQRVTELMKQKQYAPYSIADQAVSVYASNEGYMADVEVKKIVDFDAALIAYFRSEY APLMKQIDETGDYNKDIEAAIKAGIESFKATQTY A3M142 7.1.2.2 ATP synthase subunit beta Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377 0.05032718 3 LEVO MSSGRIIQIIGAVIDVEFERTSVPKIYDALQVDGTETTLEVQQQLGDGVVRTIAMGSTEGLKRGLTVTSTNAPISVPVGT ATLGRIMDVLGRPIDEAGPVATEERLPIHRQAPSYAEQAASTDLLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMME LINNIAKAHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDENGKGR DVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKSGSITSIQAVYVPADDLTDPSPATTFAHL DATVVLSRDIASSGIYPAIDPLDSTSRQLDPLVVGQEHYEIARAVQNVLQRYKELKDIIAILGMDELAEEDKLVVYRARK IQRFFSQPFHVAEVFTGAPGKLVPLKETIRGFKGLLAGEYDHIPEQAFYMVGGIDEVIAKAEKL A3M144 7.1.2.2 ATP synthase subunit c Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377 0.008363021 10 LEVO MELTLGLVAIASAILIAFGALGTAIGFGLLGGRFLEAVARQPELAPQLQTRMFLIAGLLDAVPMIGVGIGLFFIFANPFV G A3M139 ATP synthase subunit a Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377 0.032467396 1 LEVO MAAEEHALTSTEYIKHHLTNMTYGKMPDGTWKLAETAEEAHSMGFTAIHLDSMGWSIGLGVIFCLLFWIVARAANAGVPT KFQSAIEMIIEFVDSSVRDTFHGKSRLIAPLALTIFVWIFLMNLMDLIPVDWIPQVAAFVGANVFGMDPHHVYFKIVPST DPNITLGMSLSVFVLILFYSIREKGVGGFVGELALNPFNPSNPVAKALLIPVNLILELVTFLARPISLALRLFGNMYAGE LIFILIALLPFWIQWALSVPWAIFHILVITLQAFIFMMLTIVYLSMASEKH A3M137 ATP synthase subunit b Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377 0.017009312000000002 2 LEVO MNINLTLIGQAIAFAFFVAFCMKFVWPPLINAISERQRKIADGLNAAEKAKADLADAQAQVKQELDAAKAQAAQLIEQAN RRAAQLIEEARTQAAAEGERIRQQAKEAVDQEINSAREELRQQVAALAVTGAEKILNQQVDAEAHNAMLSQLAAKL A3M140 ATP synthase subunit delta Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377 0.01952501 1 LEVO MAELLTLARPYAKAAFAYASEQGATDNWSNALQVLSAAVQDEAFSAYLNRPELTPAEQVKLFAKVLGEDQSQAVSNFLTL LADNDRLVLLPEIAAEYEQLKSQNNNNVDVVIESAFPLTAEQEQLLKSALEKRFNSTVTVSVEVKPELIAGVVIRAGDQV IDDSALNKLEKMRTRLLA A3M141 ATP synthase epsilon chain Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377 0.014551682 1 LEVO MATMQCDVVSVKESIYSGAVTMLIAKGAGGELGILPGHAPLVTLLQPGPIRVLLENGTEEIVYVSGGVLEVQPHVVTVLA DTAIRADNLDEAAILEARKNAEQLLANQKSDLDSAAALAALAETAAQLETIRKIKNRAQ A3M145 ATP synthase gamma chain Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377 0.032135037 1 LEVO MANLKEIRAKVASIKSTQKITRAMQMVAASKMRRAQERMAQGRPYADNMRRVIAHLVQANPEYKHRYMVDRPVKRVGYII VSSDRGLAGGLNINLFKKVVQHVKAQQEQSIEVQFALIGQKAVSFFKNYGGKVLGATTQIGDAPSLEQLTGSVQVMLDAF DKGELDRIYLVSNGFVNAMTQKPKVEQLVPLAPAEEGDDLNRTYGWDYIYEPEAEELLNGLLVRYIESMVYQGVIENVAC EQSARMVAMKAATDNAGQLIKDLQLIYNKLRQAAITQEISEIVGGAAAV A3M143 ADENOSINE-5'-TRIPHOSPHATE 0.000507181 3 ATP MAGNESIUM ION 2.4305e-05 4 MG ADENOSINE-5'-DIPHOSPHATE 0.000427201 1 ADP PHOSPHATE ION 9.4971e-05 1 PO4 water 1.8015e-05 3 HOH singleParticle particle 0.05 6.8 50.0 C8H18N2O4S HEPES 150.0 KCl Potassium Chloride 2.0 MgCl2` Magnesium Chloride PELCO Ultrathin Carbon with Lacey Carbon COPPER 200 CARBON LACEY 300.0 GLOW DISCHARGE OTHER ETHANE 100 281 FEI VITROBOT MARK IV
4ul sample, blotted for 4s at a blotforce of -4..
Sample was applied directly from gel filtration to ultra-thin carbon in peptidiscs.
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 100.0 2.7 1.25 2.5 85000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN 20
Data collected at Diamond Light Source (Harwell, UK) using Titan Krios G3 and automated alignments using Sherpa. Detector used was Gatan K3 including energy filter.
GATAN K3 (6k x 4k) 5760 4092 1 11490 60.0 1 349160
Ab initio model generation in CryoSPARC v2.15
 1 3.1 FSC 0.143 CUT-OFF cryoSPARC 2.15 72317 MAXIMUM LIKELIHOOD cryoSPARC 2.15 MAXIMUM LIKELIHOOD cryoSPARC 2.15 3 33250.0 cryoSPARC 2.15 emd_13174.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 450 450 450 0 0 0 450 450 450 382.5 382.5 382.5 90.0 90.0 90.0 Z Y X -13.075369999999999 33.068460000000002 0.010818028 1.0659469 0.85 0.85 0.85 6.24 AUTHOR composite map generated from three original and focused maps with phenix.combine_focused_maps