2022-01-19 REL PDBe PDBe PDBe 2021-07-06 2021-09-15 2021-09-15 2022-01-19 Polish National Science Centre 2016/21/B/CC1/00274 Poland Foundation for Polish Science TEAM TECH CORE FACILITY/2017-4/6 Poland Polish National Science Centre 2019/35/D/NZ1/01770 Poland Foundation for Polish Science TEAM/2016-3/23 Poland Biotechnology and Biological Sciences Research Council (BBSRC) BB/H01778X/1 United Kingdom Japan Agency for Medical Research and Development (AMED) 20am0101079 Japan National Institutes of Health/National Cancer Institute (NIH/NCI) GM31030 United States Proton-powered peptide transporter SbmA in lipid nanodisc Ghilarov D Beis K Ghilarov D Inaba-Inoue S Stepien P Qu F Michalczyk E Pakosz Z Nomura N Ogasawara S Walker GC Rebuffat S Iwata S Heddle JG Beis K Molecular mechanism of SbmA, a promiscuous transporter exploited by antimicrobial peptides. Sci Adv US 7 eabj5363 eabj5363 2021 34516884 doi:10.1126/sciadv.abj5363 2375-2548 EMD-13173 associated EM volume Proton-driven peptide transporter SbmA in lipid nanodisc Proton-driven peptide transporter SbmA in lipid nanodisc 0 1 Escherichia coli Escherichia coli C43 SbmA Escherichia coli Escherichia coli BL21(DE3) LEVO MFKSFFPKPG TFFLSAFVWA LIAVIFWQAG GGDWVARITG ASGQIPISAA RFWSLDFLIF YAYYIVCVGL FALFWFIYSP HRWQYWSILG TALIIFVTWF LVEVGVAVNA WYAPFYDLIQ TALSSPHKVT IEQFYREVGV FLGIALIAVV ISVLNNFFVS HYVFRWRTAM NEYYMANWQQ LRHIEGAAQR VQEDTMRFAS TLENMGVSFI NAIMTLIAFL PVLVTLSAHV PELPIIGHIP YGLVIAAIVW SLMGTGLLAV VGIKLPGLEF KNQRVEAAYR KELVYGEDDA TRATPPTVRE LFSAVRKNYF RLYFHYMYFN IARILYLQVD NVFGLFLLFP SIVAGTITLG LMTQITNVFG QVRGAFQYLI NSWTTLVELM SIYKRLRSFE HELDGDKIQE VTHTLS singleParticle particle 4 7.5 Quantifoil R1.2/1.3 COPPER ETHANE 95 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 FEI TITAN KRIOS AUTOGRID HOLDER GATAN K3 BIOQUANTUM (6k x 4k) 40.0 1 cryoSPARC Patch CTF correction
Initial model generated by ab initio job in cryoSPARC
 C2 3.9 FSC 0.143 CUT-OFF cryoSPARC 3.2.0 62372 MAXIMUM LIKELIHOOD cryoSPARC MAXIMUM LIKELIHOOD cryoSPARC RELION emd_13173.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 275.2 275.2 275.2 90.0 90.0 90.0 X Y Z -1.2080455 1.7428613 0.0010387368 0.026249897 0.86 0.86 0.86 0.2 AUTHOR SbmA peptide transporter in nanodisc
Initial model generated by Buccaneer and refined by PHENIX