<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-1315" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2007-01-18</deposition>
         <header_release>2007-01-19</header_release>
         <map_release>2008-01-19</map_release>
         <update>2011-05-26</update>
      </key_dates>
      <title>Structural basis for interaction of the ribosome with the switch regions of GTP-bound elongation factors.</title>
      <authors_list>
         <author>Connell SR</author>
         <author>Wilson DN</author>
         <author>Rost M</author>
         <author>Schueler M</author>
         <author>Giesebrecht J</author>
         <author>Dabrowski M</author>
         <author>Mielke T</author>
         <author>Fucini P</author>
         <author>Spahn CMT</author>
      </authors_list>
      <keywords>
         </keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Connell SR</author>
               <author order="2">Takemoto C</author>
               <author order="3">Wilson DN</author>
               <author order="4">Wang H</author>
               <author order="5">Murayama K</author>
               <author order="6">Terada T</author>
               <author order="7">Shirouzu M</author>
               <author order="8">Rost M</author>
               <author order="9">Schuler M</author>
               <author order="10">Giesebrecht J</author>
               <author order="11">Dabrowski M</author>
               <author order="12">Mielke T</author>
               <author order="13">Fucini P</author>
               <author order="14">Yokoyama S</author>
               <author order="15">Spahn CM</author>
               <title>Structural basis for interaction of the ribosome with the switch regions of GTP-bound elongation factors.</title>
               <journal>MOLECULAR CELL</journal>
               <volume>25</volume>
               <first_page>751</first_page>
               <last_page>764</last_page>
               <year>2007</year>
               <external_references type="PUBMED">17349960</external_references>
               <external_references type="DOI">doi:10.1016/j.molcel.2007.01.027</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
      <pdb_list>
         <pdb_reference>
            <pdb_id>2om7</pdb_id>
            <relationship>
               <in_frame>FULLOVERLAP</in_frame>
            </relationship>
         </pdb_reference>
      </pdb_list>
   </crossreferences>
   <sample>
      <name>complex of Thermus thermophilus 70S ribosomes and EF-G-GMPPNP</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>complex of Thermus thermophilus 70S ribosomes and EF-G-GMPPNP</name>
            <number_unique_components>3</number_unique_components>
         </sample_supramolecule>
         <complex_supramolecule supramolecule_id="1">
            <name>Thermus thermophilus 70S ribosome</name>
            <natural_source database="NCBI">
               <organism>
                  </organism>
            </natural_source>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <ribosome-details>ribosome-prokaryote: ALL</ribosome-details>
         </complex_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="EF-G">elongation factor G</name>
            <natural_source database="NCBI">
               <organism ncbi="274">Thermus thermophilus</organism>
            </natural_source>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism>Escherichia coli BL21DE3</recombinant_organism>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <rna macromolecule_id="2">
            <name synonym="tRNA">transfer RNA</name>
            <natural_source database="NCBI">
               <organism ncbi="274">Thermus thermophilus</organism>
            </natural_source>
            <classification>TRANSFER</classification>
            <structure>OTHER</structure>
            <synthetic_flag>false</synthetic_flag>
         </rna>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <buffer>
                  <ph>7.8</ph>
                  <details>0.3 mM GMPPNP, 10 mM Hepes-KOH (pH 7.8), 10 mM
          Mg       acetate,       60 mM NH4Cl, and 6 mM B-mercaptoethanol</details>
               </buffer>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">95</chamber_humidity>
                  <chamber_temperature units="K">4</chamber_temperature>
                  <instrument>OTHER</instrument>
                  <details>Vitrification instrument: Vitrobot</details>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TECNAI F30</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">300</acceleration_voltage>
               <nominal_defocus_min units="&#181;m">0.8</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">4.0</nominal_defocus_max>
               <nominal_magnification>39000.0</nominal_magnification>
               <specimen_holder_model>OTHER</specimen_holder_model>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                     <digitization_details>
                        <scanner>PRIMESCAN</scanner>
                     </digitization_details>
                     <number_real_images>371</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">19</average_electron_dose_per_image>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>Eucentric</specimen_holder>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <ctf_correction>
               <details>defocus groups</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <resolution res_type="BY AUTHOR" units="&#8491;">7.3</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>SPIDER</name>
                  </software>
               </software_list>
               <number_images_used>77038</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="105470">
      <file>emd_1315.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>300</col>
         <row>300</row>
         <sec>300</sec>
      </dimensions>
      <origin>
         <col>-150</col>
         <row>-150</row>
         <sec>-149</sec>
      </origin>
      <spacing>
         <x>300</x>
         <y>300</y>
         <z>300</z>
      </spacing>
      <cell>
         <a units="&#8491;">378</a>
         <b units="&#8491;">378</b>
         <c units="&#8491;">378</c>
         <alpha units="deg">90</alpha>
         <beta units="deg">90</beta>
         <gamma units="deg">90</gamma>
      </cell>
      <axis_order>
         <fast>Y</fast>
         <medium>X</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-4968.550000000000182</minimum>
         <maximum>11069.200000000000728</maximum>
         <average>-29.847899999999999</average>
         <std>976.692999999999984</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">1.26</x>
         <y units="&#8491;">1.26</y>
         <z units="&#8491;">1.26</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>1820.0</level>
         </contour>
      </contour_list>
      <annotation_details>This is the volume file of the  70S-EFG-GMPPNP
      complex from Thermus thermophilus</annotation_details>
      <details>::::EMDATABANK.org::::EMD-1315::::</details>
   </map>
   <interpretation>
      <modelling_list>
         <modelling>
            <refinement_protocol>RIGID BODY FIT</refinement_protocol>
            <software_list>
               <software>
                  <name>Situs</name>
               </software>
            </software_list>
            <details>Protocol: Rigid Body</details>
         </modelling>
      </modelling_list>
   </interpretation>
</emd>