Subtomogram average of authentic mumps virus nucleocapsid from HeLa cell lysate of long helical pitch

2024-03-13 REL PDBe PDBe PDBe 2021-06-28 2023-03-01 2023-03-01 2024-03-13 European Research Council (ERC) 760067 European Union Subtomogram average of authentic mumps virus nucleocapsid from HeLa cell lysate of long helical pitch Mahamid J Zhang X Pflaesterer T Helical filament, Nucleocapsid, Protein-RNA complex, Scaffold, VIRUS Zhang X Sridharan S Zagoriy I Eugster Oegema C Ching C Pflaesterer T Fung HKH Becher I Poser I Muller CW Hyman AA Savitski MM Mahamid J Molecular mechanisms of stress-induced reactivation in mumps virus condensates. Cell 186 1877 1894.e27 2023 37116470 doi:10.1016/j.cell.2023.03.015 1097-4172 Zhang X Sridharan S Zagoriy I Oegema CE Ching C Pflaesterer T Fung HKH Poser I Mueller CW Hyman AA Savitski MM Mahamid J Condensate-mediated reactivation of mumps virus infection under stress Biorxiv US 2021 doi:10.1101/2021.07.10.451879 2692-8205 7ozr FULLOVERLAP Authentic Mumps virus nucleocapsid-RNA complex Authentic Mumps virus nucleocapsid-RNA complex 0 1 2 Mumps virus genotype A Nucleocapsid Mumps virus genotype A 0.06131673399999999 1 LEVO MSSVLKAFERFTIEQELQDRGEEGSIPPETLKSAVKVFVINTPNPTTRYQMLNFCLRIICSQNARASHRVGALITLFSLP SAGMQNHIRLADRSPEAQIERCEIDGFEPGTYRLIPNARANLTANEIAAYALLADDLPPTINNGTPYVHADVEGQPCDEI EQFLDRCYSVLIQAWVMVCKCMTAYDQPAGSADRRFAKYQQQGRLEARYMLQPEAQRLIQTAIRKSLVVRQYLTFELQLA RRQGLLSNRYYAMVGDIGKYIENSGLTAFFLTLKYALGTKWSPLSLAAFTGELTKLRSLMMLYRDIGEQARYLALLEAPQ IMDFAPGGYPLIFSYAMGVGTVLDAQMRNYTYARPFLNGYYFQIGVETARRQQGTVDNRVADDLGLTPEQRTEVTQLVDR LARGRGAGIPGGPVNPFVPPVQQQQPAAVYADIPALEESDDDGDEDGGAGFQNGVQVPAVRQGGQTDFRAQPLQDPIQAQ LFMPLYPQVSNIPSNQNHQINRIGGLENQDLLRYNENGDSQQDARGEHGNTFPNNPNQNAQLQVGDWDE A0A2Z4K4B8 RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3') Mumps virus genotype A 0.001792037 1 UUUUUU subtomogramAveraging helicalArray 7.5 Quantifoil R2/1 COPPER 200 CARBON HOLEY ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.5 3.5 81000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K2 SUMMIT (4k x 4k) COUNTING 3838 3710 1-8 1.6 2.5 1 1 4.21 -27.17 C1 BACK PROJECTION 4.5 FSC 0.143 CUT-OFF RELION 939 20 939 filament tracing Dynamo Warp RELION MAXIMUM LIKELIHOOD RELION emd_13133.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 433.6128 433.6128 433.6128 90.0 90.0 90.0 X Y Z -1.1122935 2.7664142 0.030421112 0.15163046 1.6938 1.6938 1.6938 0.72 AUTHOR ::::EMDATABANK.org::::EMD-13133:::: Major conformation of authentic mumps virus nucleocapsid from the lysate of HeLa cells after stress treatment by subtomogram averaging 4XJN A PDB experimental model FLEXIBLE FIT Correlation coefficient REAL 56.299999999999997