2022-04-20 REL PDBe PDBe PDBe 2021-06-16 2022-02-02 2022-02-02 2022-04-20 Immature 60S Ribosomal Subunit from C. thermophilum Skalidis I Kastritis PL Skalidis I Kyrilis FL Tuting C Hamdi F Chojnowski G Kastritis PL Cryo-EM and artificial intelligence visualize endogenous protein community members. Structure UK 30 575 589.e6 2022 35093201 doi:10.1016/j.str.2022.01.001 0969-2126 2005 STRUE6 EMD-13093 associated EM volume Native 60-mer core of Pyruvate Dehydrogenase Complex Native 60-mer core of Pyruvate Dehydrogenase Complex 0 1 Chaetomium thermophilum var. thermophilum DSM 1495 3 uL13 Chaetomium thermophilum var. thermophilum DSM 1495 LEVO MSSFESVVVIDGKGHLLGRLASIVAKQLLSGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRYNPTRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKKMVVPQALRVLRLQPGRKYCTVGRLSHEVGWKYQDVVARLEERRKAKGAAYYERKKLAARQLSEAKKAAAAKVDPKVSEALAAYGY eL21 Chaetomium thermophilum var. thermophilum DSM 1495 LEVO MGHAAGLRSGTRYAFSRGFRKHGQIPLSTYLRTYRVGDIVDIKVNGAVQKGMPHKFYHGKTGVVYNVTKSAVGVIVYKRVKHRYIEKRINVRIEHVKPSRSREDFLRRVKENAELKKKAKAEGVPVQLKRQPAMPREAHTVSIADNKPVTLAPVAYETTI eL13 Chaetomium thermophilum var. thermophilum DSM 1495 LEVO MAIKHNQQIPNNHFRKHWQRRVRCHFDQPGKKVTRRLARRAKAAALAPRPVDKLRPIVRCPTVKYNRRTRLGRGFTLEELKAAGIPRLLAPTIGIAVDHRRKNLSEESLAANVQRLKDYKARLILFPRKSNKPKKADTPKDQQTAETTTSLRTSFGVEQPLAPGFTEISKSEIPAGIEGGAYRALRKARSDARLVGVREKRAKEKAEAEANKK eL15 Chaetomium thermophilum var. thermophilum DSM 1495 LEVO MGALKYLEELSKKKQSDVVRFLLRVRCWEYRQLNVIHRASRPSRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKGATYGKPTNQGVNQLKYQRSLRATAEERVGRRCSNLRVLNSYWVNQDSTYKYYEVILVDPNHKAIRRDPRINWICNPVHKHRECRGLTSTGKKSRGLNKGHRFNKTRAGRRKTWKRHNTLSLWRYR eL18 Chaetomium thermophilum var. thermophilum DSM 1495 LEVO MDLVCAFIGPLFAPGARRLNLEEIAAESSSGIDLRWKHVRSSHRKAPKSDNVYLKLLVKLYRFLARRTEAPFNKVVLRRLFMSRINRPPVSLSRIARNLKNGNEKKTVVVVATVTDDNRLLQVPKMEVAALRFTAKARARIEAAGGRTLTLDQLALEKPTGANTLLLRGPKNAREAVKHFGFGPHKHKKPYVRSKGRKFERARGRRRSRGFKV uL15 Chaetomium thermophilum var. thermophilum DSM 1495 LEVO MVRQLTSGRFEREMLTFAAYPVFQDKKAPRPRVRRRVGKHRKHPGGRGMAGGQHHHRTNLDKYHPGYFGKVGMRHFHLLRNHYWRPSINIDKLWSLVPSDVREQYLSGQKKDTAPVIDLLSHGYAKLLGKGRLPEIPVVVRARYVSAEAERKVKEAGGVVELVA eL36 Chaetomium thermophilum var. thermophilum DSM 1495 LEVO MSEDATPKAPVERTGLIRGLNKGHKTTRRVLKERPSRRKGAQSKRTQFVRSLIREVAGLAPYERRVIELLRNGKDKRARKFSKKKLGTFGRAKRKCEELQRIIAESRRAH eL32 Chaetomium thermophilum var. thermophilum DSM 1495 LEVO MVAAKKHVPIVKKRTKRFMRHQSDRFKCLDSAWRKPKGIDNRVRRRFKGNLAMPSIGYGSNKKTKHMMPSGHKAFLVHNVKDVELLLMHNRTYAAEIAHNVSSRKRIDIITRAKQLGVKVTNAKAKVTTEV eL20 Chaetomium thermophilum var. thermophilum DSM 1495 LEVO MGRLQEYQVIGRHLPTEANPNPALYRMRIFAPNEVVAKSRFWYFLRGLKKVKKATGEIVSVNVISEKHPLKVKNFGIWLRYDSRSGTHNMYKEYRETSRVAAVEAMYADMAARHRARFRSIHILKVVELEKTEDVKRPYIKQLVAKNLSFPLPHRVPKISTKKIFSAKRPSTFS uL22 Chaetomium thermophilum var. thermophilum DSM 1495 LEVO MVRYAATEIAPTKSARARGSYLRVSFKNTRETAQAINGWKLQRALTFLQNVIDKKEAVPMRRYAGSTGRTAQGKQWGVSRARWPVKSAQFLIGLLKNAEANADAKGLDTGNLIIKHIQVNQAPKQRRRTYRAHGRINPYMSNPCHIELILTEAEETVQKSEAVVRDVESHLSSRQRGVRIRRALTAA eL8 Chaetomium thermophilum var. thermophilum DSM 1495 LEVO MPPKSGKKVAPAPFPQGKAGAKKAPKNPLLEKRPRNFGIGQDIQPKRNLSRMVKWPEYIRLQRQKKILRMRLKVPPAIAQFQYTLDKNLAAQAFKLLNKYRPETKQEKKERLLREATAIKEGKKKEDVSKKPYTVKYGLNHVVGLIENKKASLVLIANDVDPIELVVFLPALCRKMGIPYAIIKGKARLGTLVHKKTAAVVAITEVRSEDKNELAKLISAVKEGYLEKVEDTRKRWGGGIMGFKAQKREEKRKKSLETAIKV uL29 Chaetomium thermophilum var. thermophilum DSM 1495 LEVO MSSNGKVKAGQLWSKNKEELTKILGELKTELSQLRIQKISSSGAKLNKIHDLRKSIARVLTVINAKQRAQLRLFYKNKKYLPLDLRPKLTRALRRRLSKEDASRVLEKTKKRLTHFPQRKYAVKAATYSEGPALSIYHSHQREARCSLVQCCTFEPELRESLLLLPVAASLKGPNFTRRERQHRNPSEATMSAAEPLKLLASAGKGKSTRSVLRVAILVLIAGAAVASRLFSVIRFESIIHEFDPWFNFRATKYLVANGFYKFWDWFDDRTWHPLGRVTGGTLYPGLMVTSGVIYHLLRFLTVPVDIRNICVLLAPGFSGLTAIAAYLLTNEMTTSPSAGLLAAAFMGIAPGYISRSVAGSYDNEAIAIFLLVFTFFLWIKALKQGSMLWGALCALFYGYMVASWGGYAFITCLLPLHSFVLICMGRYSTRLYVAYTTWYALGTLASMQIPFVGFLPVKTSEHMPALGIFGFLQLLAFLDYVRSTISSRQFQTFLWLFAGGIFGLGLLGLVIATSAGLIAPWSGRFYSLWDTGYAKIHIPIIASVSEHQPTAWPAFFFDLNMLVWLFPVGVYLCFQQLGDEHVFIIVYALFGSYFAGVMVRLMLTLTPVVCVAAAIAFSSLLDTYLNLKTPNPGQAQATEDAGKKKSGLKAASKPAVGVYALWGKTMMISGLTIYLLLFVLHCTWVTSNAYSSPSVVLASRLPDGSQHIIDDYREAYQWLRQNTREDAKIMSWWDYGYQIGGMADRPTLVDNNTWNNTHIATVGKAMASREEVSYPIMRQHEVDYVLVVFGGLLGYSGDDINKFLWMVRIAEGIWPDEVSERAFFTPRGEYRVDAEATDTMKNSLMYKMCYYNYNNLFPPGQAVDRMRGVRLPEVGPTLNTLEEAFTSENWIIRIYKVKDLDNLGRDHASAAAFERGHKKKKATKKRGPRVLRVE uL6 Chaetomium thermophilum var. thermophilum DSM 1495 LEVO MRYIHSEETIPVPENGTFRKFRRNDYTFGRTRGREKKRGTTSSKIGELDINGLKVSIKSRLVTVEGPRGKLQKDLSHIAVNFSVVKKGVIGLEIHHGSRKDVAALRTVRTIINNMIIGVTKGFKYKMRYVYAHFPINVNVEKNAETGCYEVEIRNFIGEKIVRKVVMAPGVEVEISKAQKDELILSGNSLEAVSQSAADIQQICKVRNKDIRKFLDGIYVSEKGNIVED eL6 Chaetomium thermophilum var. thermophilum DSM 1495 LEVO MSAAPTTKTFGKGTRTVPAPSEKAQKWYPAEDEAQPKKVRKAVRPWTPRKSLQPGTVLILLAGRFRGKRVVLLKCLDQGVLLVTGPFKINGVPLRRVNARYVIATSVKVDLTGVDQAKIDEVAQPKYFTAEKAKEKASEEAFFKQGEKPQKKPVSSTRAADQKAIDKALIANIKKVDMLASYLASSFSLRKGDKPHLMKF uL5 Chaetomium thermophilum var. thermophilum DSM 1495 LEVO MSSEKAQNPMRELRIQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRQFGIRRNEKIAVHVTVRGPKAEEILERGLKVKEYELRRRNFSETGNFGFGISEHIDLGIKYDPSIGIYGMDFYCCMTRPGERVAKRRRCKSRIGASHRITREETIRWFKQRFDGIVR uL18 Chaetomium thermophilum var. thermophilum DSM 1495 LEVO MAFHKLVKNSAYYSRFQTKFKRRRQGKTDYYARKRLITQAKNKYNAPKYRLVVRFTNRDIITQMVTSEINGDKIFAAAYSHELRAYGINHGLTNWAAAYATGLLLARRVLAKLGLDKTFTGVEEPNGEYTLTEAAETEDGERRPFKAILDVGLARTSTGARVFGVMKGASDGGIFIPHSENRFPGYDIETEELDTEVLKKYIYGGHVAEYMETLADDDEERYKSQFVKYIEDDVEADSLEELYAEAHKQIRADPFRKYVSDAPKKSKEEWKAESLKYKKAKLSREERKARVEAKIKQLLAEQDE eL14 Chaetomium thermophilum var. thermophilum DSM 1495 LEVO MAEINVEATSWRRVEVGRVLKLENGSLAAIVEIIDHKRVLADGPSSDPKLATPRGIVPLSRALLTPIVIPKLPRGARTGAVKKAWEAYGVDAKWKETNWAKKQLQQERRQSLTDFDRFKVMRLKKQRRFEERKALAKIKAAA uL30 Chaetomium thermophilum var. thermophilum DSM 1495 LEVO MSSTTVPTQNDILVPETLLKKRKSQEKARAERAAALEKRKQANKEKRQVIFKRAEKYVKEYREQEREKIRLARIAKQQGSFHIPAEAKLVFVIRIKGINKIPPKPRKILQLLRLRQINNGVFVKVTKATAEMIKIVEPWVAYGYPNLKSVRELIYKRGYGKVNGQRIPLTDNAIIEENLGKYGIICIEDLIHEIFTVGPNFKQAANFLWPFKLSNPNGGFRPRKFKHFIEGGDLGNREEHINALIRAMN eL33 Chaetomium thermophilum var. thermophilum DSM 1495 LEVO MPSEAGHRLYVKGRHLSYQRGRRNTHPKTSLIKIEGVDDTAAANFYLGKRVAYVYRAQKEVRGTKIRVIWGKITRPHGNSGVVRAKFTHPLPARSFGASVRIMLYPSSI uL24 Chaetomium thermophilum var. thermophilum DSM 1495 LEVO MKVRPTVSSSRRKARKAHFSAPSSVRRVIMSAPLSKELREKYNVRSIPIRKGDEVQIVRGAHKDKEGKVTSVYRLKYVIHVERVTREKATGQTVPIGIHPSNVVITKLHLDKDRENILARIKAGREQVAKAKGKKTAA uL4 Chaetomium thermophilum var. thermophilum DSM 1495 LEVO MASRPTVTVFGADGKPTGATEVLPKVFSAPIRPDIVKHVHTGMAKNKRQPYAVSEKAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQGAFGNMCRSGRMFAPTKIWRKWHVKINQGQKRFATASALAASAVAPLLMARGHQVSTVPEVPLVVDSAAVAGDAVAKTAAAYKLLKAIGAGPDVEKVKKSKKLRAGKGKMRGRRHRQRRGPLIVYSPEHDGKELVKGFRNIPGVETCPVDALNLLQLAPGGHLGRFIVWTSAAIKQLDAVYESKKGFFLPANIVSQADLSRLINSTEIQSVLRAPKGEARTKRACVQKKNPLRNKQIMLRLNPYASTFAKEKLGEVKAEEGKPPKVPASFKELLHEA singleParticle particle 0.3 7.4 200.0 NH4CH2COOH Ammonium acetate ETHANE 95 277 FEI VITROBOT MARK IV
For plunging, blot force 0 and blotting time of 4 sec were applied..
TFS GLACIOS OTHER BRIGHT FIELD FIELD EMISSION GUN 200 100.0 2.7 0.8 2.0 92000.0 OTHER NITROGEN 77.15 103.15 14.7 FEI FALCON III (4k x 4k) INTEGRATING 2808 30.0 1 276399 cryoSPARC 3.1 Patch CTF 7BGJ C1 4.52 FSC 0.143 CUT-OFF cryoSPARC 3.1 Local Refinement 20279 RANDOM ASSIGNMENT MAXIMUM LIKELIHOOD 256 1000.0 cryoSPARC 3.1 2D Classification emd_13093.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 401.3568 401.3568 401.3568 90.0 90.0 90.0 X Y Z -0.99596155 3.4253058 0.008825258 0.18437766 1.5678 1.5678 1.5678 1.2 AUTHOR Immature 60S Ribosomal Subunit from C.thermophilum, Main Map emd_13093_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 501.696 501.696 501.696 90.0 90.0 90.0 X Y Z -0.2811275 6.1823516 0.06716806 0.18128142 1.5678 1.5678 1.5678 AUTHOR Signature 4 Map emd_13093_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 401.3568 401.3568 401.3568 90.0 90.0 90.0 X Y Z -0.8728601 2.7893155 0.011311718 0.20344236 1.5678 1.5678 1.5678 AUTHOR Immature 60S Ribosomal Subunit from C.thermophilum, Half-Map A emd_13093_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 401.3568 401.3568 401.3568 90.0 90.0 90.0 X Y Z -0.96388245 2.765174 0.01140767 0.20328704 1.5678 1.5678 1.5678 AUTHOR Immature 60S Ribosomal Subunit from C.thermophilum, Half-Map B