REL PDBe PDBe PDBe 2006-11-27 2006-11-27 2007-03-19 2013-09-18 Electron cryomicroscopy comparison of the architectures of the enveloped bacteriophages phi6 and phi8. Jaalinoja HT Huiskonen JT Butcher SJ Jaalinoja HT Huiskonen JT Butcher SJ Electron cryomicroscopy comparison of the architectures of the enveloped bacteriophages phi6 and phi8. STRUCTURE 15 157 167 2007 17292834 doi:10.1016/j.str.2006.12.004 Bacteriophage Phi8 core Bacteriophage Phi8 core 1 Pseudomonas phage phi8 Pseudomonas phage phi8 Pseudomonads syringae BACTERIA(EUBACTERIA) Polymerase complex 500 1 VIRION SPECIES false false Cystovirus Phi8 polymerase complex singleParticle particle
10 mM potassium phosphate pH7.5, 1 mM MgCl2, 50 mM NaCl
400 mesh copper grid, Quantifoil R2/2 holey
 ETHANE 90 HOMEMADE PLUNGER
Vitrification instrument: EMBL design
A small vial of ethane is placed inside a larger liquid nitrogen reservoir. The grid holding 3 microliters of the sample is held in place at the bottom of a plunger by the means of fine tweezers. When the liquid ethane is ready, a piece of filter paper is then pressed against the sample to blot off excess buffer, sufficient to leave a thin layer on the grid. The filter paper is removed, and the plunger is allowed to drop into the liquid ethane. Once the grid enters the liquid ethane, the sample is rapidly frozen, and the grid is transferred under liquid nitrogen to a storage box immersed in liquid nitrogen for later use in the microscope. FEI TECNAI F20 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 2.0 0.7 3.3 50000.0 49300.0 GATAN LIQUID NITROGEN 90 94 93 KODAK SO-163 FILM ZEISS SCAI 7 66 12. Side entry liquid nitrogen-cooled cryo specimen holder 0 0
Each particle, wiener factor 0.1
 I OTHER 8.7 FSC 0.5 CUT-OFF pft2, em3dr2, POR, P3DR 12867 emd_1300.map.gz 1 IMAGE STORED AS SIGNED INTEGER (2 BYTES) 543 543 543 0 0 0 543 543 543 760.2 760.2 760.2 90 90 90 X Y Z -16403.0 32443.0 289.648000000000025 4869.329999999999927 1.4 1.4 1.4 10400.0 3D reconstruction of the bacteriophage Phi8 polymerase complex
::::EMDATABANK.org::::EMD-1300::::
 emd_1300_msk_2.map emd_1300_msk_2.map 1 IMAGE STORED AS SIGNED BYTE 543 543 543 0 0 0 543 543 543 760.2 760.2 760.2 90.0 90.0 90.0 X Y Z 0.0 1.0 0.0001628639 0.012760775 1.4 1.4 1.4 Subunit A
::::EMDATABANK.org::::EMD-1300::::MASK:1::::
 emd_1300_msk_1.map emd_1300_msk_1.map 1 IMAGE STORED AS SIGNED BYTE 543 543 543 0 0 0 543 543 543 760.2 760.2 760.2 90.0 90.0 90.0 X Y Z 0.0 1.0 0.0002007645 0.014167717 1.4 1.4 1.4 Subunit A
::::EMDATABANK.org::::EMD-1300::::MASK:2::::