2024-11-06 REL PDBe PDBe PDBe 2021-05-25 2021-09-15 2021-09-15 2024-11-06 Max Planck Society Germany European Research Council (ERC) H2020 789016-NEDD8Activate Germany German Research Foundation (DFG) SCHU 3196/1-1 Germany Structure of Neddylated CUL5 C-terminal region-RBX2-ARIH2* Kostrhon SP prabu JR CUL5, NEDD8, UBQ, UBIQUITIN, ARIH2, RBX2, LIGASE Kostrhon S Prabu JR Baek K Horn-Ghetko D von Gronau S Klugel M Basquin J Alpi AF Schulman BA CUL5-ARIH2 E3-E3 ubiquitin ligase structure reveals cullin-specific NEDD8 activation. Nat.Chem.Biol. US 17 1075 1083 2021 34518685 doi:10.1038/s41589-021-00858-8 1552-4469 7oni FULLOVERLAP Neddylated CUL5 C-terminal region-RBX2-ARIH2 Neddylated CUL5 C-terminal region-RBX2-ARIH2 0 1 2 3 4 Homo sapiens Cullin-5 Homo sapiens 0.091085297 1 Trichoplusia ni LEVO MATSNLLKNKGSLQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAKIHQALKEDILEFIKQAQARV LSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKKSNVEDSIVRKLMLDTWNESIFSNIKNRLQDSAM KLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKE EEKRALRYLETRRECNSVEALMECCVNALVTSFKETILAECQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDLEEHIIS AGLADMVAAAETITTDSEKYVEQLLTLFNRFSKLVKEAFQDDPRFLTARDKAYKAVVNDATIFKLELPLKQKGVGLKTQP ESKCPELLANYCDMLLRKTPLSKKLTSEEIEAKLKEVLLVLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWL REVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVEE FYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAF PKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQEAII QIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA Q93034 E3 ubiquitin-protein ligase ARIH2 Homo sapiens 0.05787982
mutations : L381A E382A E455A
1 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LEVO GSMSVDMNSQGSDSNEEDYDPNCEEEEEEEEDDPGDIEDYYVGVASDVEQQGADAFDPEEYQFTCLTYKESEGALNEHMT SLASVLKVSHSVAKLILVNFHWQVSEILDRYKSNSAQLLVEARVQPNPSKHVPTSHPPHHCAVCMQFVRKENLLSLACQH QFCRSCWEQHCSVLVKDGVGVGVSCMAQDCPLRTPEDFVFPLLPNEELREKYRRYLFRDYVESHYQLQLCPGADCPMVIR VQEPRARRVQCNRCNEVFCFKCRQMYHAPTDCATIRKWLTKCADDSETANYISAHTKDCPKCNICIEKNGGCNHMQCSKC KHDFCWMCLGDWKTHGSEYYECSRYKENPDIVNQSQQAQAREALKKYLFYFERWENHNKSLQAAAQTYQRIHEKIQERVM NNLGTWIDWQYLQNAAKLLAKCRYTLQYTYPYAYYMESGPRKKLFEYQQAQLEAEIANLSWKVERADSYDRGDLENQMHI AEQRRRTLLKDFHDT O95376 2.3.2.31 RING-box protein 2 Homo sapiens 0.012425073 1 Trichoplusia ni LEVO GSEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNH SFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK Q9UBF6 NEDD8 Homo sapiens 0.009230691000000001 1 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LEVO GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGGG LRQ Q15843 ZINC ION 6.5409e-05 7 ZN singleParticle particle 7.5 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K3 BIOQUANTUM (6k x 4k) 14.9 1 3.4 FSC 0.143 CUT-OFF 191792 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD RELION 3.1.1 emd_12995.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 480 480 480 0 0 0 480 480 480 408.576 408.576 408.576 90.0 90.0 90.0 X Y Z -0.025877394 0.08090484 0.000045745375 0.0010586332 0.8512 0.8512 0.8512 0.0179 AUTHOR emd_12995_msk_1.map emd_12995_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 480 480 480 0 0 0 480 480 480 408.576 408.576 408.576 90.0 90.0 90.0 X Y Z -0.0017480206 1.8536485 0.00031457105 0.013202682 0.8512 0.8512 0.8512 AUTHOR emd_12995_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 480 480 480 0 0 0 480 480 480 408.576 408.576 408.576 90.0 90.0 90.0 X Y Z -0.015957205 0.056688447 0.0000023260113 0.0013489372 0.8512 0.8512 0.8512 AUTHOR emd_12995_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 480 480 480 0 0 0 480 480 480 408.576 408.576 408.576 90.0 90.0 90.0 X Y Z -0.015989613 0.056223515 0.0000038758926 0.001347083 0.8512 0.8512 0.8512 AUTHOR