<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-1285" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2006-10-31</deposition>
         <header_release>2006-10-31</header_release>
         <map_release>2007-10-31</map_release>
         <update>2012-10-24</update>
      </key_dates>
      <title>Structure of the ribosome-bound cricket paralysis virus IRES RNA.</title>
      <authors_list>
         <author>Schuler M</author>
         <author>Connell SR</author>
         <author>Lescoute A</author>
         <author>Giesebrecht J</author>
         <author>Dabrowski M</author>
         <author>Schroeer B</author>
         <author>Mielke T</author>
         <author>Penczek PA</author>
         <author>Westhof E</author>
         <author>Spahn CM</author>
      </authors_list>
      <keywords>
         </keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Schuler M</author>
               <author order="2">Connell SR</author>
               <author order="3">Lescoute A</author>
               <author order="4">Giesebrecht J</author>
               <author order="5">Dabrowski M</author>
               <author order="6">Schroeer B</author>
               <author order="7">Mielke T</author>
               <author order="8">Penczek PA</author>
               <author order="9">Westhof E</author>
               <author order="10">Spahn CM</author>
               <title>Structure of the ribosome-bound cricket paralysis virus IRES RNA.</title>
               <journal>NAT.STRUCT.MOL.BIOL.</journal>
               <volume>13</volume>
               <first_page>1092</first_page>
               <last_page>1096</last_page>
               <year>2006</year>
               <external_references type="PUBMED">17115051</external_references>
               <external_references type="DOI">doi:10.1038/nsmb1177</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
      <pdb_list>
         <pdb_reference>
            <pdb_id>2noq</pdb_id>
            <relationship>
               <in_frame>FULLOVERLAP</in_frame>
            </relationship>
         </pdb_reference>
      </pdb_list>
   </crossreferences>
   <sample>
      <name>yeast 80S ribosome in complex with the CrPV IRES RNA</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>yeast 80S ribosome in complex with the CrPV IRES RNA</name>
            <number_unique_components>2</number_unique_components>
         </sample_supramolecule>
         <complex_supramolecule supramolecule_id="1">
            <name>yeast 80S ribosome</name>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <natural_source database="NCBI">
               <organism ncbi="4932">Saccharomyces cerevisiae</organism>
               <synonym_organism>Baker's Yeast</synonym_organism>
            </natural_source>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <ribosome-details>ribosome-eukaryote: ALL</ribosome-details>
         </complex_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <rna macromolecule_id="1">
            <name>CrPV IRES</name>
            <natural_source database="NCBI">
               <organism ncbi="4932">Saccharomyces cerevisiae</organism>
               <synonym_organism>Baker</synonym_organism>
            </natural_source>
            <classification>OTHER</classification>
            <structure>DOUBLE HELIX</structure>
            <synthetic_flag>false</synthetic_flag>
         </rna>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <instrument>OTHER</instrument>
                  <details>Vitrification instrument: FEI Vitrobot</details>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TECNAI F30</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">300</acceleration_voltage>
               <nominal_defocus_min units="&#181;m">0.5</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">3.9</nominal_defocus_max>
               <nominal_magnification>39000.0</nominal_magnification>
               <specimen_holder_model>OTHER</specimen_holder_model>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                     <digitization_details>
                        <scanner>PRIMESCAN</scanner>
                        <sampling_interval units="&#181;m">4.7</sampling_interval>
                     </digitization_details>
                     <number_real_images>341</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">20</average_electron_dose_per_image>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>Eucentric</specimen_holder>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <ctf_correction>
               <details>Defocus groups</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">7.3</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>SPIDER</name>
                  </software>
               </software_list>
               <number_images_used>73313</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="105470">
      <file>emd_1285.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>300</col>
         <row>300</row>
         <sec>300</sec>
      </dimensions>
      <origin>
         <col>-150</col>
         <row>-150</row>
         <sec>-150</sec>
      </origin>
      <spacing>
         <x>300</x>
         <y>300</y>
         <z>300</z>
      </spacing>
      <cell>
         <a units="&#8491;">366</a>
         <b units="&#8491;">366</b>
         <c units="&#8491;">366</c>
         <alpha units="deg">90</alpha>
         <beta units="deg">90</beta>
         <gamma units="deg">90</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-6.03604</minimum>
         <maximum>12.044600000000001</maximum>
         <average>0.0102696</average>
         <std>1.28183</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">1.22</x>
         <y units="&#8491;">1.22</y>
         <z units="&#8491;">1.22</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>2.76</level>
         </contour>
      </contour_list>
      <annotation_details>Complex between the yeast 80S ribosome and the
      cricket paralysis virus IRES</annotation_details>
      <details>::::EMDATABANK.org::::EMD-1285::::</details>
   </map>
</emd>