<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-1280" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2006-07-07</deposition>
         <header_release>2006-10-20</header_release>
         <map_release>2007-10-03</map_release>
         <update>2011-05-26</update>
      </key_dates>
      <title>Cryo-electron microscopy study of bacteriophage T4 displaying anthrax toxin proteins.</title>
      <authors_list>
         <author>Fokine A</author>
         <author>Bowman VD</author>
         <author>Battisti AJ</author>
         <author>Li Q</author>
         <author>Chipman PR</author>
         <author>Rao VB</author>
         <author>Rossmann MG</author>
      </authors_list>
      <keywords>
         </keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Fokine A</author>
               <author order="2">Bowman VD</author>
               <author order="3">Battisti AJ</author>
               <author order="4">Li Q</author>
               <author order="5">Chipman PR</author>
               <author order="6">Rao VB</author>
               <author order="7">Rossmann MG</author>
               <title>Cryo-electron microscopy study of bacteriophage T4 displaying anthrax toxin proteins.</title>
               <journal>VIROLOGY</journal>
               <volume>367</volume>
               <first_page>422</first_page>
               <last_page>427</last_page>
               <year>2007</year>
               <external_references type="PUBMED">17624389</external_references>
               <external_references type="DOI">doi:10.1016/j.virol.2007.05.036</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>Bacteriophage T4 decorated with anthrax            toxin proteins</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Bacteriophage T4 decorated with anthrax            toxin proteins</name>
            <details>Bacteriophage T4 decorated with anthrax toxin proteins.
      N-terminal domain of the anhrax lethal factor (nLF) was fused with
      T4 Soc protein. nLF-Soc molecules were attached to the surface of
      Hoc-minus Soc-minus T4 phage mutant. Then the anthrax protective
      antigen, PA63, heptamers were attached to the capsid-exposed LFn domains.</details>
            <number_unique_components>3</number_unique_components>
         </sample_supramolecule>
         <virus_supramolecule supramolecule_id="1">
            <name>Enterobacteria phage T4</name>
            <sci_species_name ncbi="10665">Enterobacteria phage T4</sci_species_name>
            <natural_host database="NCBI">
               <organism>E.coli</organism>
               <synonym_organism>BACTERIA(EUBACTERIA)</synonym_organism>
            </natural_host>
            <host_system database="NCBI">
               </host_system>
            <virus_shell shell_id="1">
               <name>capsid shell</name>
               <diameter units="&#8491;">1200</diameter>
               <triangulation>20</triangulation>
            </virus_shell>
            <virus_shell shell_id="2">
               <diameter units="&#8491;">850</diameter>
               <triangulation>13</triangulation>
            </virus_shell>
            <virus_type>VIRION</virus_type>
            <virus_isolate>STRAIN</virus_isolate>
            <virus_enveloped>false</virus_enveloped>
            <virus_empty>false</virus_empty>
         </virus_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name>LFn-Soc fusion protein</name>
            <natural_source database="NCBI">
               <organism ncbi="1392">Bacillus anthracis</organism>
               <synonym_organism>Bacillus Anthracis</synonym_organism>
            </natural_source>
            <number_of_copies>700</number_of_copies>
            <oligomeric_state>monomer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="2">
            <name>anthrax PA63</name>
            <natural_source database="NCBI">
               <organism ncbi="1392">Bacillus anthracis</organism>
               <synonym_organism>Bacillus Anthracis</synonym_organism>
            </natural_source>
            <number_of_copies>700</number_of_copies>
            <oligomeric_state>heptamer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">40</chamber_humidity>
                  <instrument>HOMEMADE PLUNGER</instrument>
                  <details>Vitrification instrument: in house manufactured</details>
                  <method>hand blot 3 seconds, plunging during blot</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI/PHILIPS CM300FEG/T</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">300</acceleration_voltage>
               <nominal_defocus_min units="&#181;m">1.1</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">2.7</nominal_defocus_max>
               <nominal_magnification>45000.0</nominal_magnification>
               <calibrated_magnification>47000.0</calibrated_magnification>
               <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
               <alignment_procedure>
                  <legacy>
                     <astigmatism>live fft at 190,000x</astigmatism>
                  </legacy>
               </alignment_procedure>
               <date>2006-02-12</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                     <digitization_details>
                        <scanner>ZEISS SCAI</scanner>
                        <sampling_interval units="&#181;m">7</sampling_interval>
                     </digitization_details>
                     <number_real_images>50</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">20</average_electron_dose_per_image>
                     <bits_per_pixel>8.</bits_per_pixel>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>na</specimen_holder>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <ctf_correction>
               <details>Each particle</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C5</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">35.0</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>Spider</name>
                  </software>
               </software_list>
               <details>The reconstruction was performed imposing D5 symmetry</details>
               <number_images_used>722</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="82129">
      <file>emd_1280.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>276</col>
         <row>276</row>
         <sec>276</sec>
      </dimensions>
      <origin>
         <col>-138</col>
         <row>-138</row>
         <sec>-138</sec>
      </origin>
      <spacing>
         <x>276</x>
         <y>276</y>
         <z>276</z>
      </spacing>
      <cell>
         <a units="&#8491;">1644.96</a>
         <b units="&#8491;">1644.96</b>
         <c units="&#8491;">1644.96</c>
         <alpha units="deg">90</alpha>
         <beta units="deg">90</beta>
         <gamma units="deg">90</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.728074</minimum>
         <maximum>0.673265</maximum>
         <average>0.0255938</average>
         <std>0.120915</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">5.96</x>
         <y units="&#8491;">5.96</y>
         <z units="&#8491;">5.96</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.332</level>
         </contour>
      </contour_list>
      <annotation_details>Bacteriophage T4 capsid decorated with anthrax
      toxin proteins. N-terminal domain of       the anhrax lethal
      factor (nLF) was fused with T4 Soc protein.       nLF-Soc
      molecules were attached to the surface of Hoc-minus Soc-minus T4
      phage mutant. Then the anthrax protective antigen, PA63, heptamers
      were attached to the capsid-exposed LFn domains.</annotation_details>
      <details>::::EMDATABANK.org::::EMD-1280::::</details>
   </map>
   <interpretation>
      <figure_list>
         <figure>
            <file>emd_4869.tif</file>
         </figure>
      </figure_list>
   </interpretation>
</emd>