Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

2026-06-24 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY STRUCTURE_SUMMARY em_admin entity struct_ref _em_admin.last_update _entity.pdbx_description _struct_ref.pdbx_seq_one_letter_code DATABASE_REFERENCES citation citation_author _citation.journal_volume _citation.page_first _citation.page_last _citation_author.identifier_ORCID STRUCTURE_SUMMARY chem_comp pdbx_validate_torsion struct_conn _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.type _struct_conn.pdbx_leaving_atom_flag STRUCTURE_SUMMARY atom_site database_2 entity entity_name_com entity_poly entity_poly_seq entity_src_gen entity_src_nat pdbx_poly_seq_scheme pdbx_struct_mod_residue pdbx_unobs_or_zero_occ_residues struct_conn struct_ref struct_ref_seq struct_ref_seq_dif _atom_site.label_seq_id _database_2.pdbx_DOI _database_2.pdbx_database_accession _entity.formula_weight _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_src_gen.gene_src_common_name _entity_src_gen.pdbx_end_seq_num _entity_src_gen.pdbx_gene_src_gene _entity_src_nat.common_name _struct_conn.ptnr2_label_seq_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref_seq.db_align_beg _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end _struct_ref_seq.seq_align_end STRUCTURE_SUMMARY atom_site entity entity_poly entity_poly_seq entity_src_gen pdbx_poly_seq_scheme pdbx_unobs_or_zero_occ_residues struct_conn struct_ref struct_ref_seq _atom_site.label_seq_id _entity.formula_weight _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_src_gen.pdbx_end_seq_num _struct_conn.ptnr2_label_seq_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref_seq.db_align_beg _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end _struct_ref_seq.seq_align_end DERIVED_CALCULATIONS atom_site chem_comp_atom chem_comp_bond struct_conn _atom_site.auth_atom_id _atom_site.label_atom_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr2_label_atom_id DATA_COLLECTION chem_comp_atom chem_comp_bond _chem_comp_atom.atom_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.value_order STRUCTURE_SUMMARY atom_site chem_comp chem_comp_atom chem_comp_bond em_admin entity pdbx_entity_nonpoly pdbx_entry_details pdbx_modification_feature pdbx_struct_conn_angle struct_conn struct_ref _atom_site.auth_atom_id _atom_site.label_atom_id _chem_comp.mon_nstd_flag _chem_comp_atom.atom_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _em_admin.last_update _entity.pdbx_description _pdbx_entity_nonpoly.name _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _struct_conn.ptnr1_label_atom_id _struct_ref.pdbx_seq_one_letter_code PDBe PDBe 2021-04-14 2021-06-02 2021-06-02 2026-06-24 Swiss National Science Foundation 31003A_182341 Switzerland Irish Research Council IRCLA/2019/74 Ireland Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution) Bhatt PR Scaiola A Frameshift, virus, pseudoknot, RIBOSOME Bhatt PR Scaiola A Loughran G Leibundgut M Kratzel A Meurs R Dreos R O'Connor KM McMillan A Bode JW Thiel V Gatfield D Atkins JF Ban N Structural basis of ribosomal frameshifting during translation of the SARS-CoV-2 RNA genome. Science US 372 1306 1313 2021 34029205 doi:10.1126/science.abf3546 1095-9203 0038 SCIEAS EMD-12760 other EM volume 7o7y FULLOVERLAP PDB 7O7Z unspecified PDB 7O81 unspecified PDB 7O80 unspecified EMDB EMD-12760 other EM volume EMDB EMD-12756 associated EM volume

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 Rabbit 80S ribosome stalled 1 1 2 3 4 5 6 7 8 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 Oryctolagus cuniculus SARS-CoV-2 slippery site by a pseudoknot 1 9 Severe acute respiratory syndrome coronavirus 2 Rabbit 80S ribosome stalled 1 10 11 Bos taurus Replicase polyprotein 1ab 1 52 Severe acute respiratory syndrome coronavirus 2 18S rRNA Oryctolagus cuniculus 0.60392925 1 UACCUGGUUGAUCCUGCCAGUAGCAU(A2M)UGCUUG(PSU)C(PSU)CAAAGAUUAAGCCAUGCAUGUCUAAGUACGCA CGGCCGGUACAGUGAAACUGCGAA(PSU)GGCUC(A2M)UUAAA(PSU)CAG(PSU)UAUGGU(OMU)CC(PSU)U (OMU)GGUCGCUCGCUCCUCUCCUACUUGGAUAACUGUGGUA(A2M)UUCUAG(A2M)GCUAA(OMU)A(OMC)AUGCCG ACGGGCGCUGACCCCCUUCGCGGGGGGGA(PSU)GCGUGCA(PSU)UUAUCAGAUCAAAACCAACCCGGUCAGCCUCCCC CCGGCCCCGGCCGGGGGGGUGGGCGCCGGCGGCUUUGGUGACUCUAGAUAACCUCGGGCCGAUCGCACGCCCUCCGUGGC GGCGACGACCCAUUCGAACGUC(OMU)GCCCUAUCAACUUUCGAUGGUAGUCGCCGUGCCUACCAUGGUGACCACGGG (PSU)GACGGGGAAUCAGGGUUCGAU(OMU)CCGGAGA(OMG)GGAGCCUGAGAAACGGCUACCACAU(OMC)CAAGG (A2M)AGGCAGCAGGCGCGC(A2M)AAUUACCCACUCCCGACCCGGGGA(OMG)GU(A2M)GUGA(OMC)GAAAAAUAAC AAUACAGGACUCUUUCGAGGCCCUGUAAUUGGAAUGAGUCCACU(PSU)UAA(A2M)UCCUUUAACGAGG(A2M)UCCAU UGGAG(OMG)GCAAGUC(PSU)GGUGCCAGCAGCCGCGG(OMU)AAUUCCAGCUCCAAUA(OMG)CGUA(PSU)A(PSU) UAAAGUUGCUGCAGUU(A2M)AAAAGCUCGUAG(PSU)U(OMG)GA(PSU)CUUGGGAGCGGGCGGGCGGUCCGCCGCGA GGCGAGCCACCGCCCGUCCCCGCCCCUUGCCUCUCGGCGCCCCCUCGAUGCUCUUAGCUGAGUGUCCCGCGGGGCCCGAA GCGUU(PSU)ACUUUGAAAAAA(PSU)(PSU)AGAGUG(PSU)UCAAAGCAGGCCCGAGCCGCCUGGAUACCGCAGCUAG GAA(PSU)AA(PSU)(OMG)GAAUAGGACCGCGGUUCUAUUUUGUUGGUUUUCGGAACUGAGGCCAUGAUUAAGAGGGAC GGCCGGGGGCAUUCGUAUUGCGCCGCUAGAGGUGAAAU(PSU)CUUGGACCGGCGCAAGACGGACCAGAGCGAAAGCAUU (PSU)GCCAAGAAUGUUUUCAUUAAUCAAGA(A2M)CGAAAGUCGGAGG(PSU)(PSU)CGAAGACGA(PSU)CAGAUAC CGUCGUAGUUCCGACCA(PSU)AAACGAUGCCGACUGGCGAUGCGGCGGCGUUAUUCCCAUGACCCGCCGGGCAGCUUCC GGGAAACCAAAGUCUUUGGGUUCCGGGGGGAGUA(PSU)GG(PSU)UGCAAAGCUGAAACUUAAAGGAAUUGACGGAAGG GCACCACCAGGAGUGGAGCC(PSU)GCGGC(PSU)UAAUU(PSU)GAC(B8N)CAACACGGGAAACCUCACCCGGCCCGG ACACGGACAGGA(OMU)UGACAGAUUGAUAGCUCUUUCUCGAUUCCGUGGGUGG(OMU)G(OMG)UGCAUGGC(4AC)GU UCUUAGU(PSU)GGUGGAGCGAUUUGUCUGG(PSU)UAAUUCCGAUAACGA(A2M)CGAGACU(OMC)UGGCAUGCUAAC UAGUUACGCGACCCCCGAGCGGUCGGCGUCCCCCAACU(OMU)CU(PSU)A(OMG)AGGGACAAGUGGCGUUCAGCCACC CGAGAUUGAGCAAUAACA(OMG)GUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCACGCGCGCUACACUGACUGGCUCAGC GUGUGCCUACCCUACGCCGGCAGGCGCGGGUAACCCGUUGAACCCCAUUCGUGAUGGGGAUCGGGGAUUGCAAUUAU (PSU)CCCCAUGAACGAG(7MG)AAU(PSU)CCCAGUAAGUGCGGGUCAUAAGCUUGCGUUGAUU(A2M)AGUCCCUGCC CUU(PSU)GUACACACCG(OMC)CCGUCGCUACUACCGAUUGGAUGGUUUAGUGAGGCCCUCGGAUCGGCCCCGCCGGGG UCGGCCCACGGCCCUGGCGGAGCGCUGAGAAGACGGUCGAACU(OMU)GACUAUCUAGAGGAAGUAAAAGUCGUA(6MZ) CAAGGUUUC(4AC)GUAGGUG(MA6)(MA6)CCUGCGGAAGGAUCAUUA GBCT01000564.1 40S ribosomal protein S27 Oryctolagus cuniculus 0.009480186 1 LEVO MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFR RKQH G1TZ76 Ribosomal protein S28 Oryctolagus cuniculus 0.007855052 1 LEVO MDTSRVQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARRLR G1TIB4 Ribosomal protein S27a Oryctolagus cuniculus 0.018004041000000002 1 LEVO MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKR KKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK G1SK22 40S ribosomal protein S30 Oryctolagus cuniculus 0.014498884 1 LEVO MQLFVRAQELHTLEVTGRETVAQIKAHVASLEGIAPEDQVVLLAGTPLEDEATLGQCGVEALSTLEVAGRMLGGKVHGSL ARVGKVRGQTLKVAKQEKKKKRTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS G1T8A2 Ribosomal protein eS26 Oryctolagus cuniculus 0.013047531999999999

Depositor reference: GB XP_008254857.1

1 LEVO MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIH SKVVRNRSREARKDRTPPPRFRPAGAAPRPPPKPM RACK1 Oryctolagus cuniculus 0.035115652 1 LEVO MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALS GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR G1SJB4 uS14 Oryctolagus cuniculus 0.006690821 1 LEVO MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD G1U7M4 mRNA containing SARS-CoV-2 sequence Severe acute respiratory syndrome coronavirus 2 0.069683008 1 CAACUUGUGCUAAUGACCCUGUGGGUUUUACACUUAAAAACACAGUCUGUACCGUCUGCGGUAUGUGGAAAGGUUAUGGC UGUAGUUGUGAUCAACUCCGCGAACCCAUGCUUCAGUCAGCUGAUGCACAAUCGUUUUUAUAAGGGUUUGCGGUGUAAGU GCAGCCCGUCUUACACCGUGCGGCACAGGCACUAGUACUGAUGUCGUAUACAGGGCU NC_045512.2 E-site tRNA Bos taurus 0.015209543999999998 1 (N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N) (N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N) (N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)CCA P-site Phe-tRNA(Phe) Bos taurus 0.024890123 1 GCCGAAAUA(2MG)CUC(1MA)G(H2U)(H2U)GGGAGAGC(M2G)(PSU)(PSU)AGA(OMC)U(OMG)AA(YYG)A (PSU)CUAAAG(7MG)UC(5MC)CUGG(5MU)(PSU)CG(1MA)UCCCGGGUUUCGGCACCA 40S ribosomal protein SA Oryctolagus cuniculus 0.032970023 1 LEVO M(SAC)GALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSV ISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRY VDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAP EFTATQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTEWS G1TLT8 40S ribosomal protein S3a Oryctolagus cuniculus 0.030002061 1 LEVO MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVA FRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQ VRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGK ATGDETGAKVERADGYEPPVQESV G1SS70 Ribosomal protein uS5 Oryctolagus cuniculus 0.031285426

Sequence from GeneBank entry GBAX01005410.1

1 LEVO MADDAGAAGGPGGPGGPGMGGRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAEDKEWLPVTKLGRLVKDMKIKSLEE IYLFSLPIKESEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKL SIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKAT FDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAVATT 40S ribosomal protein S3 Oryctolagus cuniculus 0.031146607 1 LEVO MSARRRRRRAAFRRRAEPFIPISVREPLPFLSAARGGKMAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVT PTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGV LRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKK PLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPVPTA G1TNM3 4.2.99.18 Ribosomal protein eS4 Oryctolagus cuniculus 0.029654868999999997

Sequence from GeneBank entry XP_002720153.1

1 LEVO MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDI TYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTI QIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR GKGIRLTIAEERDKRLAAKQSSG Ribosomal protein S5 Oryctolagus cuniculus 0.022913453 1 LEVO MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHG RNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGARE AAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR G1TFM5 40S ribosomal protein S6 Oryctolagus cuniculus 0.028751905999999997 1 LEVO MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKG HSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRK PLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRAS TSKSESSQK G1TM55 40S ribosomal protein S7 Oryctolagus cuniculus 0.047356171999999995 1 LEVO EPITNRVFQALTSSDFKQQDGGSFSLSRTHLSGFRSRPRRTTIASAATRPPPIPSRGGSAPTGTPEGAGASRSSRTVPRL PPQPSGPPRAPRHPGFQRALPSLIRPEPGVRAPLLASAGTRFKRPASQAVKALSARGLLQPQVQVGPRANRVPQRREPRQ HLSGHAPGASEGGSASPTYWSLGITSWDALGFPLRLGGSSGFRSSVALFRPLSFRRGDLPRSREIWASSSAGAQPGEAMF SSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRE LEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQ QNNVEHKVETFSGVYKKLTGKDVNFEFPEFQL G1SVB0 40S ribosomal protein S8 Oryctolagus cuniculus 0.024263386999999997 1 LEVO MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIID VVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISS LLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK G1TJW1 Ribosomal protein S9 (Predicted) Oryctolagus cuniculus 0.022641563999999996 1 LEVO MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRR LVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFS LRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED B7NZS8 eS10 Oryctolagus cuniculus 0.018933846 1 LEVO MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLR DYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRGEADRDTYRRSAVPPGADKKAEAGAGSATEFQFRGGFGRGR GQPPQ G1TPV3 40S ribosomal protein S11 Oryctolagus cuniculus 0.018468826 1 LEVO MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKM KMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF G1TRM4 40S ribosomal protein S12 Oryctolagus cuniculus 0.014538986999999998 1 LEVO MAEEGIAAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVD DNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFKCKK G1SFR8 uS15 Oryctolagus cuniculus 0.017259389 1 LEVO MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGL APDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA G1SP51 40S ribosomal protein uS11 Oryctolagus cuniculus 0.016302772 1 LEVO MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQD VAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL G1T1F0 40S ribosomal protein uS19 Oryctolagus cuniculus 0.017049182 1 LEVO MAEVEQKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLSRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHL RDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK G1U0Q2 uS9 Oryctolagus cuniculus 0.019213465 1 LEVO SARVAPRFPFPVVAPRGEDRHSSAAAMPSKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEP VLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGG PGARARYQKSYR G1SGX4 40S ribosomal protein eS17 Oryctolagus cuniculus 0.015552119 1 LEVO MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERER RDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGAV G1TU13 40S ribosomal protein S18 Oryctolagus cuniculus 0.017801814 1 LEVO M(SAC)LVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQ YKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK G1TPG3 Ribosomal protein eS19 Oryctolagus cuniculus 0.016104578999999997

Sequence from GeneBank entry DN883431.1

1 LEVO MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYL(NMM)GGAGVGSMT KIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAANKKH 40S ribosomal protein uS10 Oryctolagus cuniculus 0.013398763000000001 1 LEVO MAFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRF QMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA G1SIZ2 Ribosomal protein eS21 Oryctolagus cuniculus 0.009181373999999999

Sequence from UniProt entry DN885342.1

1 LEVO (AME)QNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKSD GIVSQNF Ribosomal protein S15a Oryctolagus cuniculus 0.014865554999999999 1 LEVO MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFD VQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF G1TG89 40S ribosomal protein S23 Oryctolagus cuniculus 0.015860666 1 LEVO MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQ(HY3)NSAIRKCVRVQLIK NGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS G1SZ47 40S ribosomal protein S24 Oryctolagus cuniculus 0.015107924 1 LEVO MNDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHFGGGKTTGFGMIYDSLD YAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKANVGAGKK G1T3D8 40S ribosomal protein S25 Oryctolagus cuniculus 0.013645028 1 LEVO PPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRG SLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPAAGEDA G1TDB3 60s ribosomal protein l41 Oryctolagus cuniculus 0.003473451 1 LEVO MRAKWRKKRMRRLKRKRRKMRQRSK A0A087WNH4 28S rRNA Oryctolagus cuniculus 1.5575195 1 CGCGACCUCAGAUCAGACGUGGCGACCCGCUGAAUUUAAGCAUAUUAGUCAGCGGAGGAAAAGAAACUAACCAGGAUUCC CUCAGUAACGGCGAGUGAACAGGGAAGAGCCCAGCGCCGAAUCCCCGCCCCGCGGUGGGGCGCGGGAAAUGUGGCGUACG GAAGACCCACUCCCCGGCGCCGCUCGUGGGGGGCCCAAGUCCUUCUGAUCGAGGCCCAGCCCGUGGACGGUGUGAGGCCG GUAGCGGCCCCCGGCGCGCCGGGCCCGGGUCUUCCCGGAGUCGGGUUGCUUGGGAAUGCAGCCCAAAGCGGGUGGUAAAC UCCAUCUAAGGCUAAAUACCGGCACGAGACCGAUAGUCAACAAGUACCGUAAGGGAAAGUUGAAAAGAACUUUGAAG (A2M)G(A2M)GAGUUCAAGAGGGCGUGAAACCGUUAAGAGGUAAACGGGUGGGGUCCGCGCAGUCCGCCCGGAGGAUUC AACCCGGCGGCGUGGUCCGGCCGUGCCGGCGGUCUCGGCGGAUCUUUCCCGCUCCCCGUUCCUCCCGACCCCUCCACCCG CUCCCCCUCCCCCGCCGGUCUUCUCCCUUCACGGGGGGUGGGUCGGCGGGUGCGGGGGUGGGCGGGCGGGGCCGGGGGUG GGGUCGGCGGGGGACCGCCCCCCGGCCGGCGACCGGCCGCCGCCGGGCGCAUUUCCACCGCGGCGGUGCGCCGCGACCGG CUCCGGGACGGCUGGGAAGGCCCCGGCGGGGAAGGUGGCCCGGGGGGACGCCUCGCCGCCGUCGUCCGCGGCGGCGGCGG GCGCGACCCCUCCCCGGGUGUUACAGCCCCGCCCCGGCAGCAGCAGCUCGCCGAAUCCCGGGGCCGAGGGAGCGAGACCU GUGUCGCCGCGCUCUCCCCCCUCCCGGCGCUCCCCCCCGCGGGGGUCCCCCGCGAGGGGGCUCCCCCCGCGGGGGCGCGC CGGUGUCGCCGCCCUCGCGGGCGCGGCACGGGGGGGCCGGGCCGCCCCUCCCACGGCGCGACCGCUCUCCCGGCCCCCGC CGCCGCCUCUUCGGGCGUGCGGCGGGGGUGGGGCGGACUGUCCCCAGUGCGCCCCGGGCGUGUCACGCCGUCGGGCUCGG GGGAGAAGUCGGCCACGGCGCGUCGCGCGCCUCCGCGUCCCCCCCUCGCCGUCUCCGGGCGGCGGGGGGGGGUUUCGGCG CGGUGUUCUCGGCGCGCGCGCGCGAGCGAGCGCACGGGGUCGGCGGCGAUGUCGGCUACCCACCCGACCC(OMG)UCUUG (1MA)AAC(A2M)CGGACCAAGGAGU(OMC)UAACACGUGCGCGAGUCGGGGGCUCGCACGAAAGCCGCCGUGGCGCAAU GAAGGUGAAGGCCGGCGGCGGCUUCCCGCCGUCGUCGGCCGAGGUGGGAUCCCGAGGCCCUUCCAGUCCGCCGAGGGCGC ACCACCGGCCCGUCUCGCCCGCCGCGCCGGGGAGGUGGAGCACGAGCGCACGUGUUAGGACCC(OMG)A(A2M)AGAUGG UGA(A2M)C(PSU)AUGCCUGGGCAGGGCGAAGCCAGAGGAAACUCUGGUGGAGGUCCG(PSU)AGCGGUCCUGACGUGC AAAUCGGUCGUCCGACCUGGGUAUAG(OMG)GGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCCUCCGAAGUUUC CC(PSU)CAGGA(PSU)AGCUGGCGCUCUCGCAACCCCGCAGUUUUAUCCGGUAAAGCGAA(PSU)GAUUAGAGGUCUUG GGGCCGAAACGAUCUCAACC(PSU)A(PSU)(PSU)CUCAAACUU(PSU)AAAUGGGUAAGAAGCCCGGCUCGCUGGCGU GGAGCCGGGCGUGGAAUGCGAGUGCCUAGUGGGCCAC(PSU)U(PSU)UGGUAAGC(A2M)GAACUGGCG(OMC)UGCGG GAUGAACCGAACGCCGGGUUAAGGCGCCCGAUGCCGACGCUCAUCAGACCCCAGAAAAGGUGUUGGUUGAUAUAGACAGC AGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCGAAUCAACUAGCCCUGAAAAUGG AUGGCGCUGGAGCGUCGGGCCCAUACCCGGCCGUCGCUGGCAGUCGGCAGAGCGAGAAAGAGAGUGGAGCGCGCCGCGGG ACUCCCCCCGCGGGGGUCCCCGGCCACCCCCCCCCCGCGGACGCUACGCCGCGACGAGUAGGAGGGCCGCUGCGGUGAGC CUUGAAGCCUAGGGCGCGGGCCCGGGUGGAGCCGCCGCAGGUGCAGAU(OMC)UUGGUGGUAGU(A2M)(OMG)(OMC)A AAUAUUCAAACGAGAACUUUGAAGGCCGAAGUGG(A2M)GAAGGGUUCCAUG(OMU)GAACAG(OMC)A(OMG)UUGAAC AUGGGUCAGUCGGUCCUGAGAGAUGGGCGAGCGCCGUUCCGAAGGGACGGGCGAUGGCCUCCGUUGCCCUCAGCCGA (PSU)CGAAAGGGAGUCGGGUUCAGAUCCCCGAAUCCGGAGUGGCGGAGAUGGGCGCCGCGAGGCGUCCAGUGCGGUAAC GCGACCGAUCCCGGAGAAGCCGGCGGGAGCCCCGGGGAGAGUUCUCUU(PSU)UCUUUGUGAAGGGCAGGGCGCCCUGGA AUGGGUUCGCCCCGAGAGAGGGGCCCGUGCCUUGGAAAGCGUCGCGGUUCCGGCGGCGUCCGGUGAGCUCUCGCUGGCCC UUGAAAAUCCGGGGGAGAGGGUGUAAAUCUCGCGCCGGGCCGUACCC(A2M)UAUCCGCAGCAGGUCU(OMC)CAAGGUG AAC(A2M)GCCUCUGG(OMC)AUGUUGGAACAA(OMU)GUAGGUAAGGGAAGUCGGCAAGC(OMC)GGAUCCGUAACUUC (OMG)GGAUAAGGAUUGGCUCUAAGGGCUGGGUCGGUCGGGCUGGGGCGCGAAGCGGGGCUGGGCGCGCGCCGCGGCUGG ACGAGGCGCCGCCGCCCCCCCCACGCCCGGGGCGCCCUCCCCCGGCCGGGUCCGCUCCCUCGCGCGCGCGUGCGCCGUGG CGCGCGCCGCGCGCGCGGCCGAGCCCCGUCUCCCUCCCCCCCUCUCCCCUCCCGGGGCGGGGUGCGGGGAGGGGCGGGCG GGGCCGUCGCUCGCCGCGCGUGCGCGUCGCUGCGCGUGCGCCGCGCGGGGGGUCCGGCGGGCCUCCGGACGGGGGCUCCG GGCACCCGGGCACCCGGGGGGCCGGCGGCGGCGGCGACUCUGGACGCGAGCCGGGCCCUUCCCGUGGAUCGCCCCAGCUG CGGCGGGCGUCGCGGCCGCCCUCGGGGAGCCCGGCGGGCGCCGCGUGCGCGCGCGUGCGCGCCCGGGGUCGGGGGGGUGC GAGGCAGGGGAGGCCCUCUCUCCUCCUCCCCCACCCCGGCGCCGCGGCGCCGCGCGUGCGCGCGCGGUCUCCCCCCGCCG GGUCCGCCCCCGGGGCCGCGGUUCCGCGCGGCGCCUCGCCUCGGCCGGCGCCUAGCAGCCGACUUAGAACUGGUGCGGAC CAGG(OMG)GAAUCCGAC(PSU)G(PSU)UUAAUUAAAACAAAGCAUCGCGAAGGCCCGCGGCGGGUGUUGACGCGAUGU GAUU(PSU)CUGCC(OMC)AGUGCUCUGAAUG(PSU)CA(A2M)AGUGA(A2M)GAAAU(PSU)CAA(PSU)GAAGCGCG G(OMG)UAAACGGCGGGAG(PSU)A(A2M)C(PSU)A(PSU)GAC(PSU)C(PSU)CUUAAGGUAGC(5MC)AA(A2M)U GCCUC(OMG)UCAUCUAAUUAGUGA(OMC)GCGCAUGAA(UY1)GGA(PSU)GA(A2M)CGAG(A2M)UUCCCACUGU (OMC)CC(PSU)ACCUAC(PSU)A(PSU)CCAGCGAAACCAC(A2M)G(OMC)CAAGGGAACGGGCU(PSU)GG(OMC)G GAAUCAGCGG(OMG)GAAAGAAGACCCUGUUGAGC(PSU)UGAC(OMU)CUAGUCUGGCACGGUGAA(OMG)AGACAUGA GAGGUGUAGAAUAAGUGGGAGGCCCCCGGCGCCCUCCCGCCCCCGCGAGGGGGCGGGGCGGGGUCCGCCGGCCUUGCGGG CCGCCGGUGAAAUACCACUACUCUUAUCGUUUUUUCACUGACCCGGUGAGGCGGGGGGGCGAGCCCCGAGGGGCUCUCGC UUCUGGCGCCAAGCGCCGGGCCCCGUCGGUCCGCGCGGGCCGGCGGCGGCCGGGCGCGACCCGCUCCGGGGACAGUGCCA GGUGGGGAGUUUGACUG(OMG)GGCGGUACACCUGUCAAACGGUA(6MZ)CGCAGG(OMU)(OMG)UCCUAAGGCGAGCU CAGGGAGGACAGAAACCUCCCGUGGAGCAGAAGGGCAAAAGCUCGCUUGA(PSU)CU(PSU)GA(PSU)UUUCAG(OMU) ACGAA(PSU)ACAGACCGUGAAAGCGGGGCCUCACGAUCCUUCUGAGCUU(PSU)UGGGUUU(PSU)AAGCAGGA(OMG) GUGUCAGAAAAGUUACCACAG(OMG)GAUAACUGGC(PSU)UGUGGCGGCCAAGCGU(PSU)CA(PSU)AGCGACG (PSU)CGCUUUUUGA(PSU)CCUU(5MC)GAUGUCGG(OMC)(PSU)CUUCCUAUCAUUG(PSU)GAAGCAGAAUUCACC AAGCGUU(OMG)GAU(OMU)(OMG)(PSU)UCACCCACUAAUAGGGAACG(PSU)G(A2M)GCUGGG(UR3)U(PSU)AG A(OMC)CGUCGUGAGACAGGU(PSU)AGUUUUACCCUACUGAUG(A2M)UGUG(PSU)UG(PSU)UGCCAUGGUA(A2M) UCCUGCUCAGUACGAGAGGAACCGCAG(OMG)U(OMU)CA(OMG)ACAU(PSU)UGGUGUA(PSU)(OMG)UGCUUGGCU GAGGAGCCAAUGGGGCGAAGCUACCA(PSU)CUGUGGGAUUAUGAC(PSU)GAACGCCUCUAAGUCAGAAUCCCGCCCAG GCGGAACGAUACGGCAGCGCCGAAGGAGCCUCGGUUGGCCUCGGAUAGCCGGUCCCCCGCCGUCCCCGCCGGCGGCCCGC GUCGUGCGUCCGCCUCGGCGGCGUGCGGCGCGCCCCCCGCCGCGCGUCGGGACCGGGGUCCGGUGCGGAGAGCCCUUCGU CCCGGGAAAUGGGGCGCGGCCGGAAAGGGGGCCGCCCUCUCGCCCGUCACGCACCGCACGUUCGUGGGGAACCUGGCGCU AAACCA(PSU)UCGUAGACGACCUGCUUCUGGGUCGGGG(PSU)UUCGUACG(PSU)AGCAGAGCAGCUCCCUCGCUGCG AUCUAUUGAAAGUCAGCCCUCGACACAAGGGUUUGU GBCN01009604.1 5S rRNA Oryctolagus cuniculus 0.038851870999999996 1 (GTP)UCUACGGCCAUACCACCCUGAACGCGCCCGAUCUCGUCUGAUCUCGGAAGCUAAGCAGGGUCGGGCCUGGUUAGU ACUUGGAUGGGAGACCGCCUGGGAAUACCGGGUGCUGUAGGCUU GBCM01014045.1 5.8S rRNA Oryctolagus cuniculus 0.050809046999999996 1 CGACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGC(PSU)GCGAGAAUUAAUG(PSU)GAA UU(OMG)CAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCGGGUUCCUCCCGGGGCUACGCCUGUCUGA GCGUCGCUUG GBCN01009604.1 Ribosomal protein uL2 Oryctolagus cuniculus 0.028103854999999997

Sequence from GeneBank entry XP_002723515.1

1 LEVO MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAE GIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISS ANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGN(V5N)QHIGKPSTIRRDAPAGRKVG LIAARRTGRLRGTKTVQEKEN Ribosomal protein L3 Oryctolagus cuniculus 0.046120996 1 LEVO MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVE TPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDDAGKRQLDKDFSSMKKYCQVI RVLAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL PRKT(HIC)RGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINP LGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDR IAKEEGA G1TL06 60S ribosomal protein L4 Oryctolagus cuniculus 0.04643089499999999 1 LEVO M(AYA)CARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARI PRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVED KVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCVIYNEDNGIVKAFRNIPGITLLNVTKLN ILKLAPGGHVGRFCIWTESAFRKLDDLYGTWRKAASLKSNYNLPMHKMLNTDLSRILKSPEIQRALRAPRKKIHRRVLKK NPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLRVERAAAALAAKSDPKEAPAKKKPVVGKKKKPVVGRKAAAAKKPAAD KKAADKRAGPEDKKPAA G1SVW5 Ribosomal_L18_c domain-containing protein Oryctolagus cuniculus 0.034523862999999995 1 LEVO M(AAC)FVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVC AAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTG NKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPDMM EEMYKKAHAAIRENPVYEKKPKREVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAES G1SYJ6 60S ribosomal protein L6 Oryctolagus cuniculus 0.033028336 1 LEVO MAGEKAPAAKPDATKKSPAKKADHARGKAKKKTLAEKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYAAPKS RIERKKKREKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRH RGKRVVFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEK EKYEITEQRKVDQKAVDSQILPKIKAVPQLQGYLRSVFALTNGVYPHKLVF G1SKF7 Ribosomal Protein uL30 Oryctolagus cuniculus 0.029201836

Sequence from GeneBank entry XP_002710681.1

1 LEVO MEGAEEKKKVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNF YVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGK INKKRIALTDNTLIARSLGKYNIICMEDLIHEIYTVGKHFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQIN RLIRRMN Ribosomal protein eL8 Oryctolagus cuniculus 0.030061784999999997

Sequence from GeneBank entry GBCD01000651.1

1 LEVO MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAI NQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHD VDPIELVVFLPALCRKMGVPYCILKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGN VLGPKSVARIAKLEKAKAKELATKLG 60S ribosomal protein L9 Oryctolagus cuniculus 0.021871418 1 LEVO MKTILSNQTVDIPENVDISLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNM IKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELVLEGNDIELVSNSAAL IQQATTVKNKDIRKFLDGIYVSEKGTVQQADE G1SWI6 60S ribosomal protein L10 Oryctolagus cuniculus 0.024643057 1 LEVO MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSC GKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVVEALRRAKFKFP GRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPLDKWRALHS B7NZQ2 Ribosomal protein L11 Oryctolagus cuniculus 0.020288465 1 LEVO MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAE EILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKE EAMRWFQQKYDGIILPGK G1TUB8 Replicase polyprotein 1ab Severe acute respiratory syndrome coronavirus 2 0.12156584399999999 1 Oryctolagus cuniculus LEVO AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCH IDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLNRVCGVSAARLTP CGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDF FKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGER VRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDL TKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFV VSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYD FAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS AGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAA TRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ VLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDF VNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVK QGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLD MYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ P0DTD1 Ribosomal protein eL13 Oryctolagus cuniculus 0.024331723

Sequence from GeneBank entry XP_002710580.1

1 LEVO MAPSRNGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQARARRIAPRPAAGPIRPIVRCPTVRYHTKVRAGRGFSLEE LRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLVLFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNV FKKEKARVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQDVEKKK Ribosomal protein L14 Oryctolagus cuniculus 0.023870548999999998 1 LEVO MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKA DINTKWAATRWAKKIEARERKAKMTDFDRYKVMKAKKMRNRIIKNEVKKLQRAALLKASPKKAPVAKGAVAAAAAAAKVP AKKATAAGKKAAAQKAPAQKAPAQKAAGQKAAQPPKAQKGQKPPAQKAPAPKASGKKA G1SZ12 Ribosomal protein L15 Oryctolagus cuniculus 0.024207285 1 LEVO MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGAT YGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHRE MRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR G1T0C1 Ribosomal protein uL13 Oryctolagus cuniculus 0.023533298999999997

Sequence from GeneBank entry XP_002723961.2

1 LEVO MAEGQVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIF WRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKR KEKAKIHYRKKKQLMRLRKQAEKNVEKKISKFTDVLKTHGLLV uL22 Oryctolagus cuniculus 0.021444221 1 LEVO MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWTQ GRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKP EEEVAQKKKISQKKLKKQKLMARE G1TVT6 Ribosomal Protein eL18 Oryctolagus cuniculus 0.021699687999999998

Sequence from GeneBank entry XP_008250645.1

1 LEVO MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTA VVVGTVTDDVRVQEVPKLKVCALRVTSRARSRILKAGGKILTFDQLALDSPKGRGTVLLSGPRKGREVYRHFGKAPGTPH SHTKPYVRSKGRKFERARGRRASRGYKN 60S ribosomal protein L19 Oryctolagus cuniculus 0.023535280999999998 1 LEVO MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGK RKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAE ARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK Q3T0W9 Ribosomal protein eL20 Oryctolagus cuniculus 0.020749391

Sequence from GeneBank entry GBCK01009614.1

1 LEVO MKASGTLREYKVVGRCLPTPKSPAPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGI WLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQVMKVEEMAAARCRRPAVKQFHDSRIRFPLPHRVLR RQHKPRFSAKRPNTFF eL21 Oryctolagus cuniculus 0.018609988 1 LEVO MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQV KGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA G1SHQ2 Ribosomal protein eL22 Oryctolagus cuniculus 0.014756908999999999

Sequence from GeneBank entry CU464830.1

1 LEVO MAPVKKLVAKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGAVTIERSKSKITVTSEVPFSK RYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDEEEEEDED Ribosomal protein L23 Oryctolagus cuniculus 0.014892504999999999 1 LEVO MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAV VIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA G1T6D1 eL24 Oryctolagus cuniculus 0.017825111 1 LEVO MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQR AITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR G1SE28 uL23 Oryctolagus cuniculus 0.017768245999999998 1 LEVO MAPKAKKEAPAPPKVEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFP LTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII G1SE76 Ribosomal protein L26 Oryctolagus cuniculus 0.017303363 1 LEVO MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVI YIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETIEKMQE G1SQH0 60S ribosomal protein L27 Oryctolagus cuniculus 0.015835830999999998 1 LEVO MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHL MPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF G1TXF6 60S ribosomal protein L27a Oryctolagus cuniculus 0.016635551 1 LEVO MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGM(V5N)HHRINFDKYHPGYFGKVGMRHYHLKRNQSFCPTVNLD KLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA G1SNY0 60S ribosomal protein L29 Oryctolagus cuniculus 0.026721726999999997 1 LEVO MAKS(MLZ)NHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQANNAKAMAARAEAIKALV KPKEVKPTIPKGVSRKLHRLAYIAHPKLGRRARARIARGLRLSRPQTKAKAKTEPQIKGKVKAQIKAQAQAQIKSKGKGK AQAETKPKAQAETKPKAQAQAKPKAQAQGKPKAQAQGKPKAQAQAKPKAQAQAKPKAQAQTKPKAQATPAAPVPAQAPPK GAQPPAKAP G1SGR6 eL30 Oryctolagus cuniculus 0.012807065 1 LEVO MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQSLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIE LGTACGKYYRVCTLSIIDPGDSDIIRSMPEQTGEK G1TDL2 eL31 Oryctolagus cuniculus 0.014494937999999999 1 LEVO MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNV PYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN G1SHG0 eL32 Oryctolagus cuniculus 0.015898932 1 LEVO MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVH NVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE G1U437 eL33 Oryctolagus cuniculus 0.012580808999999998 1 LEVO MSGRLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGN SGMVRAKFRSNLPAKAIGHRIRVMLYPSRI G1SF08 60S ribosomal protein L34 Oryctolagus cuniculus 0.013326074 1 LEVO MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGG SMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK G1TXG5 uL29 Oryctolagus cuniculus 0.014566599 1 LEVO MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKP LDLRPKKTRAMRRRLNKHEESLKTKKQQRKERLYPLRKYAVKA G1SIT5 60S ribosomal protein L36 Oryctolagus cuniculus 0.012263834 1 LEVO MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTH IRAKRKREELSSVLAAMRKAAAKKD G1TTQ5 Ribosomal protein L37 Oryctolagus cuniculus 0.011111031999999998 1 LEVO MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFRE GTTPKPKRAAVAASSSS U3KPD5 eL38 Oryctolagus cuniculus 0.008238948 1 LEVO MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKELK G1U001 eL39 Oryctolagus cuniculus 0.0064557749999999995 1 LEVO MSSHKTFRIKRFLAKKQKQNRPIPQWIWMKTGNKIRYNSKRRHWRRTKLGL G1TTN1 60S ribosomal protein L40 Oryctolagus cuniculus 0.014800474 1 LEVO MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEP SLRQLAQKYNCDKMICR(M3L)CYARLHPRAVNCRKKKCGHTNNLRPKKKVK eL42 Oryctolagus cuniculus 0.012489990999999999 1 LEVO MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQT(MLZ)PIFRKKAKTTKKIVLRLECVEPN CRSKRMLAIKRCKHFELGGDKKRKGQVIQF G1U344 eL43 Oryctolagus cuniculus 0.01029935 1 LEVO MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVK SAIRRLKELKDQ G1SY53 Ribosomal protein eL28 Oryctolagus cuniculus 0.015844696

Sequence from GeneBank entry GBCM01003096.1

1 LEVO M(SAC)AHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATS YVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVMVKRKRTRPTKSS 60S acidic ribosomal protein P0 Oryctolagus cuniculus 0.034380504 1 LEVO MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLP HIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQL IKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITEDTLHSRFLEGVRNVASVCLQIGYPTVASVPHS IINGYKRVLALSVETEYTFPLAEKVKAFLADPSAFVAAAPVAAASTAAPAAAAAAPAKVEAKEESEESDEDMGFGLFD G1SPK4 Ribosomal protein L12 Oryctolagus cuniculus 0.017847619 1 LEVO MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASAL IIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAV ECPAS G1SMR7 Ribosomal protein uL1 Oryctolagus cuniculus 0.024875409999999997 1 LEVO MGDILSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQQHCDEAKAV DIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMK KVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY G1SKZ8 SPERMIDINE 0.000145246 30 SPD SPERMINE 0.00020234 3 SPM MAGNESIUM ION 2.4305e-05 420 MG UNKNOWN LIGAND 330 UNX ZINC ION 6.5409e-05 8 ZN water 1.8015e-05 11341 HOH singleParticle particle 0.3 7.4 Quantifoil R2/2 COPPER 400 CARBON CONTINUOUS 1.0 ETHANE-PROPANE 100 277 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 100.0 2.7 81000.0 56604.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GIF Quantum LS 20 GATAN K3 (6k x 4k) 60.0 1 Gctf PHASE FLIPPING AND AMPLITUDE CORRECTION 2.2 FSC 0.143 CUT-OFF cryoSPARC 2 695501 MAXIMUM LIKELIHOOD cryoSPARC 2 MAXIMUM LIKELIHOOD cryoSPARC 2 emd_12756.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 560 560 560 0 0 0 560 560 560 593.6 593.6 593.6 90.0 90.0 90.0 X Y Z -6.790845 16.274508000000001 -0.0037760548 0.30716982 1.06 1.06 1.06 1.5 AUTHOR ::::EMDATABANK.org::::EMD-12756:::: emd_12756_msk_2.map emd_12756_msk_1.map emd_12756_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 560 560 560 0 0 0 560 560 560 593.6 593.6 593.6 90.0 90.0 90.0 X Y Z -0.7012858 3.7914164 0.004140786 0.11434501 1.06 1.06 1.06 AUTHOR ::::EMDATABANK.org::::EMD-12756:::: emd_12756_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 560 560 560 0 0 0 560 560 560 593.6 593.6 593.6 90.0 90.0 90.0 X Y Z -0.70332265 3.8642812 0.004134487 0.114342995 1.06 1.06 1.06 AUTHOR ::::EMDATABANK.org::::EMD-12756::::