<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-1274" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2006-01-17</deposition>
         <header_release>2006-10-12</header_release>
         <map_release>2006-10-12</map_release>
         <update>2011-05-26</update>
      </key_dates>
      <title>Structure of Ca2+ release channel at 14 A resolution.</title>
      <authors_list>
         <author>Serysheva II</author>
         <author>Hamilton SL</author>
         <author>Chiu W</author>
         <author>Ludtke SJ</author>
      </authors_list>
      <keywords>
         </keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Serysheva II</author>
               <author order="2">Hamilton SL</author>
               <author order="3">Chiu W</author>
               <author order="4">Ludtke SJ</author>
               <title>Structure of Ca2+ release channel at 14 A resolution.</title>
               <journal>J.MOL.BIOL.</journal>
               <volume>345</volume>
               <first_page>427</first_page>
               <last_page>431</last_page>
               <year>2005</year>
               <external_references type="PUBMED">15581887</external_references>
               <external_references type="DOI">doi:10.1016/j.jmb.2004.10.073</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>ryanodine receptor 1</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>ryanodine receptor 1</name>
            <details>The sample was purified after solubiliztion            with
      detergent       from rabbit skeletal muscle</details>
            <oligomeric_state>Homotetramer</oligomeric_state>
            <number_unique_components>1</number_unique_components>
            <molecular_weight>
               <theoretical units="MDa">0.565</theoretical>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="Skeletal muscle calcium release channel">Ryanodine receptor type 1</name>
            <natural_source database="NCBI">
               <organism ncbi="9986">Oryctolagus cuniculus</organism>
               <strain>White New Zealand</strain>
               <synonym_organism>rabbit</synonym_organism>
               <tissue>fast twitch skeletal muscle</tissue>
               <cell>muscle cell</cell>
               <organelle>sarcoplasmic reticulum</organelle>
               <cellular_location>sarcoplasmic reticulum membrane</cellular_location>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.565</experimental>
            </molecular_weight>
            <details>detergent solubilized membrane protein</details>
            <number_of_copies>4</number_of_copies>
            <oligomeric_state>Homotetramer</oligomeric_state>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               <external_references type="GO">GO:0005219</external_references>
               <external_references type="INTERPRO">IPR000699</external_references>
            </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">0.2</concentration>
               <buffer>
                  <ph>7.4</ph>
                  <details>300 mM KCl, 1 mM DTT, 0.4 % CHAPS, 5% sucrose,
          1mM       EGTA, 20       mM Mops</details>
               </buffer>
               <grid>
                  <details>thin carbon film support by holey carbon 400
        mesh Cu grid</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_temperature units="K">101</chamber_temperature>
                  <instrument>HOMEMADE PLUNGER</instrument>
                  <details>Vitrification instrument: Manual Plunger</details>
                  <method>Blot for about 3 second before plunging</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>JEOL 1200EX</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>TUNGSTEN HAIRPIN</electron_source>
               <acceleration_voltage units="kV">100</acceleration_voltage>
               <nominal_cs units="mm">5.6</nominal_cs>
               <nominal_defocus_min units="&#181;m">0.9</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">4.1</nominal_defocus_max>
               <nominal_magnification>40000.0</nominal_magnification>
               <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
               <temperature>
                  <temperature_min units="K">109</temperature_min>
                  <temperature_max units="K">110</temperature_max>
                  <temperature_average units="K">109</temperature_average>
               </temperature>
               <alignment_procedure>
                  <legacy>
                     <astigmatism>objective lens astigmatism was corrected at 300,000X</astigmatism>
                  </legacy>
               </alignment_procedure>
               <details>Electron Microscope JEM2010F</details>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                     <digitization_details>
                        <scanner>ZEISS SCAI</scanner>
                        <sampling_interval units="&#181;m">4.667</sampling_interval>
                     </digitization_details>
                     <number_real_images>52</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">7</average_electron_dose_per_image>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>Side entry</specimen_holder>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <ctf_correction>
               <details>CTF correction of each micrograph</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C4</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">14.0</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>EMAN</name>
                  </software>
               </software_list>
               <number_images_used>22000</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="3908">
      <file>emd_1274.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>100</col>
         <row>100</row>
         <sec>100</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>100</x>
         <y>100</y>
         <z>100</z>
      </spacing>
      <cell>
         <a units="&#8491;">462.033</a>
         <b units="&#8491;">462.033</b>
         <c units="&#8491;">462.033</c>
         <alpha units="deg">90</alpha>
         <beta units="deg">90</beta>
         <gamma units="deg">90</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-2.02439</minimum>
         <maximum>3.1551</maximum>
         <average>0.0582325</average>
         <std>0.324772</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">4.667</x>
         <y units="&#8491;">4.667</y>
         <z units="&#8491;">4.667</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.366</level>
         </contour>
      </contour_list>
      <annotation_details>The map is rendered from the cytoplasmic side
      (top view) along 4-fold axis of the protein</annotation_details>
      <details>::::EMDATABANK.org::::EMD-1274::::</details>
   </map>
</emd>