2024-07-10 REL PDBe PDBe PDBe 2021-04-10 2021-05-19 2021-05-19 2024-07-10 European Union (EU) 766970 European Union Netherlands Organisation for Scientific Research (NWO) 184.034.014 Netherlands 2.12 A cryo-EM structure of Mycobacterium tuberculosis Ferritin Gijsbers A Zhang Y Iron storage; Ferroxidase; Bacterial Ferritin; Octahedral symmetry., METAL TRANSPORT Gijsbers A Zhang Y Gao Y Peters PJ Ravelli RBG Mycobacterium tuberculosis ferritin: a suitable workhorse protein for cryo-EM development. Acta Crystallogr D Struct Biol 77 1077 1083 2021 34342280 doi:10.1107/S2059798321007233 2059-7983 7o6e FULLOVERLAP Mycobacterium tuberculosis ferritin Mycobacterium tuberculosis ferritin 0 1
Mycobacterium tuberculosis ferritin
Mycobacterium tuberculosis H37Rv H37Rv 0.490 Ferritin BfrB Mycobacterium tuberculosis H37Rv 0.020463936000000002 24 Escherichia coli BL21(DE3) LEVO MTEYEGPKTKFHALMQEQIHNEFTAAQQYVAIAVYFDSEDLPQLAKHFYSQAVEERNHAMMLVQHLLDRDLRVEIPGVDT VRNQFDRPREALALALDQERTVTDQVGRLTAVARDEGDFLGEQFMQWFLQEQIEEVALMATLVRVADRAGANLFELENFV AREVDVAPAASGAPHAAGGRL P9WNE5 1.16.3.1 water 1.8015e-05 1392 HOH singleParticle particle 11 8.0 20.0 (HOCH2)3CNH2 Tris 150.0 NaCl Sodium Chloride UltrAuFoil GOLD 300 GOLD HOLEY ARRAY 2000.0 GLOW DISCHARGE AIR 0.01 ETHANE 100 277 FEI VITROBOT MARK IV
This sample was monodisperse.
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 50.0 2.7 0.4 0.2 1.4000000000000001 2.0 130000.0 76757.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN 93.0 105.0 GIF Bioquantum 20
Basic direct alignments were done as well as astigmatism and coma alignment using AutoCTF
GATAN K3 BIOQUANTUM (6k x 4k) 5760 4092 1 2518 1.3 40.0
Images were acquired in superresolution counting mode at a speed of 64 movies/hour and stored as tiff lzw non-gain normalised
 1 249563 3QD8 O FOURIER SPACE 2.1 FSC 0.143 CUT-OFF RELION 3.1 163568 MAXIMUM LIKELIHOOD RELION 3.1 MAXIMUM LIKELIHOOD RELION 3.1 40 RELION 3.1 emd_12738.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 208.448 208.448 208.448 90.0 90.0 90.0 X Y Z 0.0 25.939672000000002 0.4104235 1.6182348 0.65139997 0.65139997 0.65139997 7.0 AUTHOR Sharpened map with Locspiral. 3QD8 A 10-181 PDB experimental model OTHER Correlation coefficient REAL 28.100000000000001 emd_12738_msk_1.map emd_12738_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 208.44801 208.44801 208.44801 90.0 90.0 90.0 X Y Z -0.017656295 0.047544703 0.00029712752 0.0027432705 0.6514 0.6514 0.6514 AUTHOR Relion postprocessing sharpened map emd_12738_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 208.44801 208.44801 208.44801 90.0 90.0 90.0 X Y Z -0.011324262 0.033646677 0.00012932671 0.002267575 0.6514 0.6514 0.6514 AUTHOR emd_12738_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 208.44801 208.44801 208.44801 90.0 90.0 90.0 X Y Z -0.011429482 0.031832404 0.00012929403 0.0022693092 0.6514 0.6514 0.6514 AUTHOR