Yeast TFIIH in the expanded state within the pre-initiation complex

2026-09-02 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update DATABASE_REFERENCES citation _citation.journal_volume _citation.page_first _citation.page_last REFINEMENT_DESCRIPTION chem_comp_atom chem_comp_bond database_2 em_3d_fitting_list em_admin pdbx_initial_refinement_model _database_2.pdbx_DOI _database_2.pdbx_database_accession _em_3d_fitting_list.accession_code _em_3d_fitting_list.initial_refinement_model_id _em_3d_fitting_list.source_name _em_3d_fitting_list.type _em_admin.last_update REMEDIATION REPOSITORY Metalloprotein remediation STRUCTURE_SUMMARY em_admin pdbx_entry_details pdbx_modification_feature pdbx_nonpoly_atom_coordination pdbx_nonpoly_atom_coordination_sphere pdbx_nonpoly_atom_coordination_sphere_order _em_admin.last_update _pdbx_entry_details.has_protein_modification PDBe PDBe 2021-04-06 2021-06-16 2021-06-16 2026-09-02 H2020 Marie Curie Actions of the European Commission 894862 Germany German Research Foundation (DFG) EXC 2067/1 39072994 Germany German Research Foundation (DFG) SFB860 Germany German Research Foundation (DFG) SPP2191 Germany European Research Council (ERC) 882357 Germany Yeast TFIIH in the expanded state within the pre-initiation complex Schilbach S Aibara S Pre-initiation complex, TRANSCRIPTION Schilbach S Aibara S Dienemann C Grabbe F Cramer P Structure of RNA polymerase II pre-initiation complex at 2.9 angstrom defines initial DNA opening. Cell 184 4064 4072.e28 2021 34133942 doi:10.1016/j.cell.2021.05.012 1097-4172 7o4l FULLOVERLAP EMDB EMD-12722 associated EM volume

Yeast TFIIH in the expanded state within the pre-initiation complex Yeast TFIIH in the expanded state within the pre-initiation complex 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 1.37 General transcription and DNA repair factor IIH helicase subunit XPD Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.089899047 1 Trichoplusia ni LEVO MKFYIDDLPVLFPYPKIYPEQYNYMCDIKKTLDVGGNSILEMPSGTGKTVSLLSLTIAYQMHYPEHRKIIYCSRTMSEIE KALVELENLMDYRTKELGYQEDFRGLGLTSRKNLCLHPEVSKERKGTVVDEKCRRMTNGQAKRKLEEDPEANVELCEYHE NLYNIEVEDYLPKGVFSFEKLLKYCEEKTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHNI DNVCIESLSLDLTTDALRRATRGANALDERISEVRKVDSQKLQDEYEKLVQGLHSADILTDQEEPFVETPVLPQDLLTEA IPGNIRRAEHFVSFLKRLIEYLKTRMKVLHVISETPKSFLQHLKQLTFIERKPLRFCSERLSLLVRTLEVTEVEDFTALK DIATFATLISTYEEGFLLIIEPYEIENAAVPNPIMRFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPRMLNFKTVLQ KSYAMTLAKKSFLPMIITKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVFFPSYLYMESIVSMWQTMGIL DEVWKHKLILVETPDAQETSLALETYRKACSNGRGAILLSVARGKVSEGIDFDHQYGRTVLMIGIPFQYTESRILKARLE FMRENYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFSRKRSQLPKWIAQGLSDADLNLSTDMAISNTKQF LRTMAQPTDPKDQEGVSVWSYEDLIKHQNSRKDQGGFIENENKEGEQDEDEDEDIEMQ P06839 3.6.4.12 General transcription and DNA repair factor IIH subunit TFB1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.073194516 1 Trichoplusia ni LEVO GGSMSHSGAAIFEKVSGIIAINEDVSPAELTWRSTDGDKVHTVVLSTIDKLQATPASSEKMMLRLIGKVDESKKRKDNEG NEVVPKPQRHMFSFNNRTVMDNIKMTLQQIISRYKDADIYEEKRRREESAQHTETPMSSSSVTAGTPTPHLDTPQLNNGA PLINTAKLDDSLSKEKLLTNLKLQQSLLKGNKVLMKVFQETVINAGLPPSEFWSTRIPLLRAFALSTSQKVGPYNVLSTI KPVASSENKVNVNLSREKILNIFENYPIVKKAYTDNVPKNFKEPEFWARFFSSKLFRKLRGEKIMQNDRGDVIIDRYLTL DQEFDRKDDDMLLHPVKKIIDLDGNIQDDPVVRGNRPDFTMQPGVDINGNSDGTVDILKGMNRLSEKMIMALKNEYSRTN LQNKSNITNDEEDEDNDERNELKIDDLNESYKTNYAIIHLKRNAHEKTTDNDAKSSADSIKNADLKVSNQQMLQQLSLVM DNLINKLDLNQVVPNNEVSNKINKRVITAIKINAKQAKHNNVNSALGSFVDNTSQANELEVKSTLPIDLLESCRMLHTTC CEFLKHFYIHFQSGEQKQASTVKKLYNHLKDCIEKLNELFQDVLNGDGESMSNTCTAYLKPVLNSITLATHKYDEYFNEY NNNSN P32776 General transcription and DNA repair factor IIH subunit TFB2 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.058900601999999996 1 Trichoplusia ni LEVO GPGSMSDYSLKHSVTQYLEEIPQQVQNRLYTSPATCLAIYRILPPLAKFFIMAMVFNENEVPLLDLDKWVNSNGKLQFQN AIKSMKSLHLLIPNKSSGTLMINLNPTFKISLRNALTGGEVQNSFGVVVEENVVSLDLLDEYSANKWETILHFMVGTPLA KIPSEKVLNLLKHSKLMEEVNSTGEFKITNEGFQFLLQEINSQLWTLLLQYLKMIETSKMDLVDVLHFIFMLGALEVGKA YKIDALSETQRIMLQDMRDYGLVFQKHSNDSIFYPTKLALMLTSDTKTIRSASNAMDSVLRQNREEPSVNEDGANGKSTT DITTSDDLNKAGLKNQDIPDGSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITADQI IAYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQ DIGVLLWKDDKKKKFFISKEGNSQVLDFAKRKLKKKQ Q02939 RNA polymerase II transcription factor B subunit 3 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.038480745999999996 1 Trichoplusia ni LEVO GPHMLMDEYEENKDMCPICKTDRYLSPDVKFLVNPECYHRICESCVDRIFSLGPAQCPYKGCDKILRKNKFKTQIFDDVE VEKEVDIRKRVFNVFNKTIDDFNGDLVEYNKYLEEVEDIIYKLDHGIDVAKTEEKLRTYEELNKQLIMNNLERSRTEIES FEQRQKFEKEMKLKKRLLERQIEEEERMNKEWTKKEIVNRLSTTTQDINETIEGVKNTVKLKKSSARRKLEELNRVLKNN PYFNSNVNVQNSRLKDAVPFTPFNGDREAHPRFTLKGSVYNDPFIKDLEHRKEFIASGFNTNYAYERVLTEAFMGLGCVI SEEL Q03290 General transcription and DNA repair factor IIH subunit TFB4 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.037778676 1 Trichoplusia ni LEVO SNAMDAISDPTFKHARSRKQVTEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSANKVAVIA AYSQGIKYLYPESTSALKASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYKLFELEKKQIEQNSQRSTLAGAMSAGL TYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIFQYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLH VESTEGLIQYLATAMFIDPSLRPIIVKPNHGSVDFRTSCYLTGRVVAVGFICSVCLCVLSIIPPGNKCPACDSQFDEHVI AKLKRKPVVPRLKAKKKVTKP Q12004 General transcription and DNA repair factor IIH subunit TFB5 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.008541787 1 Trichoplusia ni LEVO GPGSMARARKGALVQCDPSIKALILQIDAKMSDIVLEELDDTHLLVNPSKVEFVKHELNRLLSKNIYNPMDEEENQ Q3E7C1 General transcription and DNA repair factor IIH subunit SSL1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.052571215 1 Trichoplusia ni LEVO GGSMAPVVISESEEDEDRVAITRRTKRQVHFDGEGDDRVDQQQQQHSSSHRDRDKHVQRKKKKRLSNRNLQGSNGGYAWE DEIKRSWDLVKVDDEGDMASLVASIVEARKKRTAKKNITPYQRGIIRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFV HEFFDQNPISQMGIIIMRNGLAQLVSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFG SLSTTDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELFNEAVTPLPVNKINKGF TLVKMGFPTRIFEDTPTFCSCHSKLVYGGYFCPNCHSKVCSLPTVCPCCDLMLILSTHLARSYHHLMPLKTFAEVPTTEK FRSEDCFSCQSRFPILKNHKNGKLLTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCESKPVIT Q04673 General transcription and DNA repair factor IIH helicase subunit XPB Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.095461664 1 Trichoplusia ni LEVO MTDVEGYQPKSKGKIFPDMGESFFSSDEDSPATDAEIDENYDDNRETSEGRGERDTGAMVTGLKKPRKKTKSSRHTAADS SMNQMDAKDKALLQDTNSDIPADFVPDSVSGMFRSHDFSYLRLRPDHASRPLWISPSDGRIILESFSPLAEQAQDFLVTI AEPISRPSHIHEYKITAYSLYAAVSVGLETDDIISVLDRLSKVPVAESIINFIKGATISYGKVKLVIKHNRYFVETTQAD ILQMLLNDSVIGPLRIDSDHQVQPPEDVLQQQLQQTAGKPATNVNPNDVEAVFSAVIGGDNEREEEDDDIDAVHSFEIAN ESVEVVKKRCQEIDYPVLEEYDFRNDHRNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGITAA CTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTESGLVVSTYSMVANTRNRSHDSQKVMDFLTGR EWGFIILDEVHVVPAAMFRRVVSTIAAHAKLGLTATLVREDDKIGDLNFLIGPKLYEANWMELSQKGHIANVQCAEVWCP MTAEFYQEYLRETARKRMLLYIMNPTKFQACQFLIQYHERRGDKIIVFSDNVYALQEYALKMGKPFIYGSTPQQERMNIL QNFQYNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAKRRNDEGFNAFFYSLVSKDTQEMYYST KRQAFLVDQGYAFKVITHLHGMENIPNLAYASPRERRELLQEVLLKNEEAAGIEVGDDADNSVGRGSNGHKRFKSKAVRG EGSLSGLAGGEDMAYMEYSTNKNKELKEHHPLIRKMYYKNLKK Q00578 3.6.4.12 DNA-directed RNA polymerase II subunit RPB1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.191821578 1 LEVO MVGQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGH FGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQ LVSRGGCGNTQPTIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLP VPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKSGR PVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHP GAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNA DFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVI PTPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQ VCAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVR FLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFV ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEK QSLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNI RRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQ AFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYL EPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLLRLELDRA AMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAETEAEEDHMLKKIENTMLENITLRGVENIE RVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDG SYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGA FDVMIDEESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEAT SPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSP SYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENENSR P04050 2.7.7.6 DNA-directed RNA polymerase II subunit RPB2 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.138937297 1 LEVO MSDLANSEKYYDEDPYGFEDESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTE SDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPGRELKYELIAEESEDDS ESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEI RSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVED GFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDH FGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVS QVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSE WGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIV EDDESLGHKELKVRKGHIAKLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEEND LDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQ KPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRT NTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDG LKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGN EGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVE GRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAA KLLFQELMAMNITPRLYTDRSRDF P08518 2.7.7.6 DNA-directed RNA polymerase II subunit RPB4 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.025451190999999998 1 Escherichia coli BL21(DE3) LEVO MNVSTSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIKEALVERRRAFKRSQKKHKKK HLKHENANDETTAVEDEDDDLDEDDVNADDDDFMHSETREKELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETV GAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY P20433 DNA-directed RNA polymerases I, II, and III subunit RPABC2 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.017931833999999997 1 LEVO MSDYEEAFNDGNENFEDFDVEHFSDEETYEEKPQFKDGETTDANGKTIVTGGNGPEDFQQHEQIRRKTLKEKAIPKDQRA TTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDWSVEELIVDL P20435 DNA-directed RNA polymerase II subunit RPB7 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.019909934 1 Escherichia coli BL21(DE3) LEVO MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFK PFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHAI GSIKEDYLGAIHHHHHH P34087 Nontemplate DNA synthetic construct 0.032716976999999994 1 (DC)(DG)(DA)(DG)(DA)(DA)(DC)(DA)(DG)(DT)(DA)(DG)(DC)(DA)(DC)(DG)(DC)(DT)(DG)(DT) (DG)(DT)(DA)(DT)(DA)(DT)(DA)(DA)(DT)(DA)(DG)(DC)(DT)(DA)(DT)(DG)(DG)(DA)(DA)(DC) (DG)(DT)(DT)(DC)(DG)(DA)(DT)(DT)(DC)(DA)(DC)(DC)(DT)(DC)(DC)(DG)(DA)(DT)(DG)(DT) (DG)(DT)(DG)(DT)(DT)(DG)(DT)(DA)(DC)(DA)(DT)(DA)(DC)(DA)(DT)(DA)(DA)(DA)(DA)(DA) (DT)(DA)(DT)(DC)(DA)(DT)(DA)(DG)(DC)(DA)(DC)(DA)(DA)(DC)(DT)(DG)(DC)(DG)(DC)(DT) (DG)(DT)(DG)(DT)(DC)(DA) DNA Template DNA synthetic construct 0.032680919999999995 1 (DT)(DG)(DA)(DC)(DA)(DC)(DA)(DG)(DC)(DG)(DC)(DA)(DG)(DT)(DT)(DG)(DT)(DG)(DC)(DT) (DA)(DT)(DG)(DA)(DT)(DA)(DT)(DT)(DT)(DT)(DT)(DA)(DT)(DG)(DT)(DA)(DT)(DG)(DT)(DA) (DC)(DA)(DA)(DC)(DA)(DC)(DA)(DC)(DA)(DT)(DC)(DG)(DG)(DA)(DG)(DG)(DT)(DG)(DA)(DA) (DT)(DC)(DG)(DA)(DA)(DC)(DG)(DT)(DT)(DC)(DC)(DA)(DT)(DA)(DG)(DC)(DT)(DA)(DT)(DT) (DA)(DT)(DA)(DT)(DA)(DC)(DA)(DC)(DA)(DG)(DC)(DG)(DT)(DG)(DC)(DT)(DA)(DC)(DT)(DG) (DT)(DT)(DC)(DT)(DC)(DG) DNA Transcription initiation factor IIE subunit alpha Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.055951038999999994 1 Escherichia coli BL21(DE3) LEVO MDRPIDDIVKNLLKFVVRGFYGGSFVLVLDAILFHSVLAEDDLKQLLSINKTELGPLIARLRSDRLISIHKQREYPPNSK SVERVYYYVKYPHAIDAIKWKVHQVVQRLKDDLDKNSEPNGYMCPICLTKYTQLEAVQLLNFDRTEFLCSLCDEPLVEDD SGKKNKEKQDKLNRLMDQIQPIIDSLKKIDDSRIEENTFEIALARLIPPQNQSHAAYTYNPKKGSTMFRPGDSAPLPNLM GTALGNDSSRRAGANSQATLHINITTASDEVAQRELQERQAEEKRKQNAVPEWHKQSTIGKTALGRLDNEEEFDPVVTAS AMDSINPDNEPAQETSYQNNRTLTEQEMEERENEKTLNDYYAALAKKQAKLNKEEEEEEEEEEDEEEEEEEEMEDVMDDN DETARENALEDEFEDVTDTAGTAKTESNTSNDVKQESINDKTEDAVNATATASGPSANAKPNDGDDDDDDDDDEMDIEFE DVAAALEHHHHH P36100 Transcription initiation factor IIE subunit beta Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.037050434 1 Escherichia coli BL21(DE3) LEVO MSKNRDPLLANLNAFKSKVKSAPVIAPAKVGQKKTNDTVITIDGNTRKRTASERAQENTLNSAKNPVLVDIKKEAGSNSS NAISLDDDDDDEDFGSSPSKKVRPGSIAAAALQANQTDISKSHDSSKLLWATEYIQKKGKPVLVNELLDYLSMKKDDKVI ELLKKLDRIEFDPKKGTFKYLSTYDVHSPSELLKLLRSQVTFKGISCKDLKDGWPQCDETINQLEEDSKILVLRTKKDKT PRYVWYNSGGNLKCIDEEFVKMWENVQLPQFAELPRKLQDLGLKPASVDPATIKRQTKRVEVKKKRQRKGKITNTHMTGI LKDYSHRV P36145 IRON/SULFUR CLUSTER 0.00035163999999999996 1 SF4 ZINC ION 6.5409e-05 11 ZN BERYLLIUM TRIFLUORIDE ION 6.600700000000001e-05 1 BEF MAGNESIUM ION 2.4305e-05 1 MG ADENOSINE-5'-DIPHOSPHATE 0.000427201 1 ADP singleParticle particle 7.6 Quantifoil R3.5/1 COPPER CARBON CONTINUOUS ETHANE 100 277 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.5 4.0 130000.0 NITROGEN GIF Quantum LS 20 GATAN K2 SUMMIT (4k x 4k) COUNTING 29670 9.0 43.6 1 4300000 Warp RELION PHASE FLIPPING AND AMPLITUDE CORRECTION EMD-3846 3.4 FSC 0.143 CUT-OFF 34198 MAXIMUM LIKELIHOOD RELION MAXIMUM LIKELIHOOD RELION RELION emd_12722.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 380 380 380 0 0 0 380 380 380 398.99997 398.99997 398.99997 90.0 90.0 90.0 Z Y X -66.865160000000003 93.915580000000006 0.051579367 1.0102191 1.05 1.05 1.05 3.7 AUTHOR ::::EMDATABANK.org::::EMD-12722:::: 5OQJ PDB experimental model OTHER REAL emd_12722_msk_1.map emd_12722_additional_10.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 380 380 380 0 0 0 380 380 380 398.99997 398.99997 398.99997 90.0 90.0 90.0 X Y Z -0.025922595 0.048204213 -0.000007813476 0.0014731821 1.05 1.05 1.05 AUTHOR ::::EMDATABANK.org::::EMD-12722:::: Half-map 2 of focused refinement encompassing the Ssl1/Tfb4-eZnF/Tfb1-3-helix-bundle region of the pre-initiation complex emd_12722_additional_9.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 380 380 380 0 0 0 380 380 380 398.99997 398.99997 398.99997 90.0 90.0 90.0 X Y Z -0.025665402 0.05945688 0.00004209663 0.0017433235 1.05 1.05 1.05 AUTHOR ::::EMDATABANK.org::::EMD-12722:::: Half-map 1 of focused refinement encompassing the Ssl2/Tfb2/Tfb5 region of the pre-initiation complex emd_12722_additional_8.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 380 380 380 0 0 0 380 380 380 398.99997 398.99997 398.99997 90.0 90.0 90.0 X Y Z -0.027417306 0.052170493 -0.000004474192 0.0015041848 1.05 1.05 1.05 AUTHOR ::::EMDATABANK.org::::EMD-12722:::: Half-map 1 of focused refinement encompassing the Ssl1/Tfb4-eZnF/Tfb1-3-helix-bundle region of the pre-initiation complex emd_12722_additional_7.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 380 380 380 0 0 0 380 380 380 398.99997 398.99997 398.99997 90.0 90.0 90.0 X Y Z -0.03355086 0.07851754 0.00003971413 0.0026358962 1.05 1.05 1.05 AUTHOR ::::EMDATABANK.org::::EMD-12722:::: Half-map 1 of focused refinement encompassing the Rad3/Ssl1 region of the pre-initiation complex emd_12722_additional_6.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 380 380 380 0 0 0 380 380 380 398.99997 398.99997 398.99997 90.0 90.0 90.0 X Y Z -0.037879378 0.08093581 0.000039707822 0.0024123525 1.05 1.05 1.05 AUTHOR ::::EMDATABANK.org::::EMD-12722:::: Half-map 2 of focused refinement encompassing the Pol II stalk region of the pre-initiation complex emd_12722_additional_5.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 380 380 380 0 0 0 380 380 380 398.99997 398.99997 398.99997 90.0 90.0 90.0 X Y Z -0.034100264 0.07749177 0.000040394654 0.0027305826 1.05 1.05 1.05 AUTHOR ::::EMDATABANK.org::::EMD-12722:::: Half-map 2 of focused refinement encompassing the Rad3/Ssl1 region of the pre-initiation complex emd_12722_additional_4.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 380 380 380 0 0 0 380 380 380 398.99997 398.99997 398.99997 90.0 90.0 90.0 X Y Z -0.0386857 0.08767175 0.000039211645 0.0025024521 1.05 1.05 1.05 AUTHOR ::::EMDATABANK.org::::EMD-12722:::: Half-map 1 of focused refinement encompassing the Pol II stalk region of the pre-initiation complex emd_12722_additional_3.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 380 380 380 0 0 0 380 380 380 398.99997 398.99997 398.99997 90.0 90.0 90.0 X Y Z -0.030651342 0.056289703 -0.00031710905 0.0016524761 1.05 1.05 1.05 AUTHOR ::::EMDATABANK.org::::EMD-12722:::: Half-map 2 of focused refinement encompassing the Pol II-clamp/TFIIE/Tfb1-PHD region of the pre-initiation complex emd_12722_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 380 380 380 0 0 0 380 380 380 398.99997 398.99997 398.99997 90.0 90.0 90.0 X Y Z -0.031403895 0.05738228 -0.00031406034 0.0016896038 1.05 1.05 1.05 AUTHOR ::::EMDATABANK.org::::EMD-12722:::: Half-map 1 of focused refinement encompassing the Pol II-clamp/TFIIE/Tfb1-PHD region of the pre-initiation complex emd_12722_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 380 380 380 0 0 0 380 380 380 398.99997 398.99997 398.99997 90.0 90.0 90.0 X Y Z -0.039393693 0.11197049 -0.000015882379 0.003436656 1.05 1.05 1.05 AUTHOR ::::EMDATABANK.org::::EMD-12722:::: Locally filtered map (non-composite) of a refinement of PIC-bound TFIIH in the expanded state emd_12722_additional_12.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 380 380 380 0 0 0 380 380 380 398.99997 398.99997 398.99997 90.0 90.0 90.0 X Y Z -0.025741974 0.058647882 0.00004172544 0.0017121276 1.05 1.05 1.05 AUTHOR ::::EMDATABANK.org::::EMD-12722:::: Half-map 2 of focused refinement encompassing the Ssl2/Tfb2/Tfb5 region of the pre-initiation complex emd_12722_additional_13.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 380 380 380 0 0 0 380 380 380 398.99997 398.99997 398.99997 90.0 90.0 90.0 X Y Z -0.0244741 0.054982968 -0.00006660049 0.0017154536 1.05 1.05 1.05 AUTHOR ::::EMDATABANK.org::::EMD-12722:::: Half-map 1 of focused refinement encompassing the Tfb2 region of the pre-initiation complex emd_12722_additional_11.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 380 380 380 0 0 0 380 380 380 398.99997 398.99997 398.99997 90.0 90.0 90.0 X Y Z -0.025805231 0.048053734 -0.00006835546 0.0016709302 1.05 1.05 1.05 AUTHOR ::::EMDATABANK.org::::EMD-12722:::: Half-map 2 of focused refinement encompassing the Tfb2 region of the pre-initiation complex emd_12722_additional_14.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 380 380 380 0 0 0 380 380 380 398.99997 398.99997 398.99997 90.0 90.0 90.0 X Y Z -0.027141511 0.055437267 -0.00031744395 0.0016224213 1.05 1.05 1.05 AUTHOR ::::EMDATABANK.org::::EMD-12722:::: Half-map 1 of focused refinement encompassing the Tfb3-RING-finger/TFIIE/Pol II-stalk region of the pre-initiation complex emd_12722_additional_15.map.gz 1 IMAGE 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