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    <admin>
        <current_status>
            <date>2024-07-10</date>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2021-03-28</deposition>
            <header_release>2022-04-13</header_release>
            <map_release>2022-04-13</map_release>
            <update>2024-07-10</update>
        </key_dates>
        <title>ABC transporter NosDFY, nucleotide-free in GDN, R-domain 2</title>
        <authors_list>
            <author>Mueller C</author>
            <author>Zhang L</author>
        </authors_list>
        <keywords>ABC Transporter complex, nucleotide-free, MEMBRANE PROTEIN</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Muller C</author>
                    <author ORCID="0000-0001-5431-5006" order="2">Zhang L</author>
                    <author order="3">Zipfel S</author>
                    <author order="4">Topitsch A</author>
                    <author order="5">Lutz M</author>
                    <author order="6">Eckert J</author>
                    <author order="7">Prasser B</author>
                    <author order="8">Chami M</author>
                    <author ORCID="0000-0002-3009-1025" order="9">Lu W</author>
                    <author ORCID="0000-0003-1467-1203" order="10">Du J</author>
                    <author ORCID="0000-0001-8722-2893" order="11">Einsle O</author>
                    <title>Molecular interplay of an assembly machinery for nitrous oxide reductase.</title>
                    <journal_abbreviation>Nature</journal_abbreviation>
                    <country>UK</country>
                    <volume>608</volume>
                    <first_page>626</first_page>
                    <last_page>631</last_page>
                    <year>2022</year>
                    <external_references type="PUBMED">35896743</external_references>
                    <external_references type="DOI">doi:10.1038/s41586-022-05015-2</external_references>
                    <external_references type="ISSN">1476-4687</external_references>
                    <external_references type="CSD">0006</external_references>
                    <external_references type="ASTM">NATUAS</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <pdb_list>
            <pdb_reference>
                <pdb_id>7o10</pdb_id>
                <relationship>
                    <in_frame>FULLOVERLAP</in_frame>
                </relationship>
            </pdb_reference>
        </pdb_list>
    </crossreferences>
    <sample>
        <name>ABC Transporter NosFY in complex with accessory periplasmic protein NosD</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>ABC Transporter NosFY in complex with accessory periplasmic protein NosD</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>2</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>3</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <details>Nucleotide-free state, R-domain conformation 2</details>
                <natural_source database="NCBI">
                    <organism ncbi="32042">Pseudomonas stutzeri ATCC 14405 = CCUG 16156</organism>
                </natural_source>
            </complex_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name>Probable ABC transporter binding protein NosD</name>
                <natural_source database="NCBI">
                    <organism ncbi="32042">Pseudomonas stutzeri ATCC 14405 = CCUG 16156</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.048258499999999996</theoretical>
                </molecular_weight>
                <number_of_copies>1</number_of_copies>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="83333">Escherichia coli K-12</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MFKAQATFSRYSAAVSLLLLFSGAAQAAPQSITTLPLQPDGENRWRLPAGEYQGQFTIEQPMQLRCEPGAVIQSQGQGSS
LLISAPDVLVEGCTLYEWGSDLTAMDSAVFILPAAERAQISNNRMRGPGFGVFVDGTRDVQVIGNEIDGDAGVRSQDRGN
GIHLFAVSGARVLHNHVRNARDGIYIDTSNGNHLEGNVIEDVRYGVHYMFANENSLIDNVTRRTRTGYALMQSRKLTVTG
NRSEQDQNYGILMNYITYSTITGNFVSDVQRGDTGGDSMISGGEGKALFIYNSLFNTIENNHFEKSSLGIHLTAGSEDNR
ISGNAFVGNQQQVKYVASRTQEWSVDGRGNYWSDYLGWDRNNDGLGDIAYEPNDNVDRLLWLYPQVRLLMNSPSIEVLRW
VQRAFPVIKSPGVQDSHPLMKLPTEKLLTEKQEPTS</string>
                    <external_references type="UNIPROTKB">P19843</external_references>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="2">
                <name>Probable ABC transporter ATP-binding protein NosF</name>
                <natural_source database="NCBI">
                    <organism ncbi="32042">Pseudomonas stutzeri ATCC 14405 = CCUG 16156</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.033821703</theoretical>
                </molecular_weight>
                <number_of_copies>2</number_of_copies>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="83333">Escherichia coli K-12</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MNAVEIQGVSQRYGSMTVLHDLNLNLGEGEVLGLFGHNGAGKTTSMKLILGLLSPSEGQVKVLGRAPNDPQVRRQLGYLP
ENVTFYPQLSGRETLRHFARLKGAALTQVDELLEQVGLAHAADRRVKTYSKGMRQRLGLAQALLGEPRLLLLDEPTVGLD
PIATQDLYLLIDRLRQRGTSIILCSHVLPGVEAHINRAAILAKGCLQAVGSLSQLRAEAGLPVRIRASGISERDSWLQRW
TDAGHSARGLSESSIEVVAVNGHKLVLLRQLLGEGEPEDIEIHQPSLEDLYRYYMERAGDVRAQEGRL</string>
                    <external_references type="UNIPROTKB">P19844</external_references>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="3">
                <name>Probable ABC transporter permease protein NosY</name>
                <natural_source database="NCBI">
                    <organism ncbi="32042">Pseudomonas stutzeri ATCC 14405 = CCUG 16156</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.029449203</theoretical>
                </molecular_weight>
                <number_of_copies>2</number_of_copies>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="83333">Escherichia coli K-12</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MNQVWNIARKELSDGLRNRWLLAISLLFAVLAVGIAWLGAAASGQLGFTSIPATIASLASLATFLMPLIALLLAYDAIVG
EDEGGTLMLLLTYPLGRGQILLGKFVGHGLILALAVLIGFGCAALAIALLVEGVELGMLFWAFGRFMISSTLLGWVFLAF
AYVLSGKVNEKSSAAGLALGVWFLFVLVFDLVLLALLVLSEGKFNPELLPWLLLLNPTDIYRLINLSGFEGSGSAMGVLS
LGADLPVPAAVLWLCLLAWIGVSLLLAYAIFRRRLT</string>
                    <external_references type="UNIPROTKB">P19845</external_references>
                </sequence>
            </protein_or_peptide>
            <ligand macromolecule_id="4">
                <name>MAGNESIUM ION</name>
                <molecular_weight>
                    <theoretical units="MDa">2.4305e-05</theoretical>
                </molecular_weight>
                <number_of_copies>1</number_of_copies>
                <formula>MG</formula>
            </ligand>
            <ligand macromolecule_id="5">
                <name>water</name>
                <molecular_weight>
                    <theoretical units="MDa">1.8015e-05</theoretical>
                </molecular_weight>
                <number_of_copies>1</number_of_copies>
                <formula>HOH</formula>
            </ligand>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <concentration units="mg/mL">15</concentration>
                    <buffer>
                        <ph>8.0</ph>
                    </buffer>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_cs units="mm">2.7</nominal_cs>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN K2 SUMMIT (4k x 4k)</film_or_detector_model>
                            <detector_mode>COUNTING</detector_mode>
                            <digitization_details/>
                            <average_exposure_time units="s">8.0</average_exposure_time>
                            <average_electron_dose_per_image units="e/Å^2">49.6</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <startup_model type_of_model="NONE"/>
                <final_reconstruction>
                    <resolution units="Å" res_type="BY AUTHOR">3.6</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <number_images_used>65429</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>3.1</version>
                        </software>
                    </software_list>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>3.1</version>
                        </software>
                    </software_list>
                </final_angle_assignment>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
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        <file>emd_12685.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>300</col>
            <row>300</row>
            <sec>300</sec>
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            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>300</x>
            <y>300</y>
            <z>300</z>
        </spacing>
        <cell>
            <a units="Å">307.80002</a>
            <b units="Å">307.80002</b>
            <c units="Å">307.80002</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.020612756</minimum>
            <maximum>0.05451412</maximum>
            <average>-0.00003930782</average>
            <std>0.0017050817</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">1.026</x>
            <y units="Å">1.026</y>
            <z units="Å">1.026</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.014</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-12685::::</label>
        <annotation_details>Detergent-subtracted refinement, R-domain 2, unsharpened</annotation_details>
    </map>
    <interpretation>
        <additional_map_list>
            <additional_map format="CCP4" size_kbytes="108001">
                <file>emd_12685_additional_1.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>300</col>
                    <row>300</row>
                    <sec>300</sec>
                </dimensions>
                <origin>
                    <col>0</col>
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                    <sec>0</sec>
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                <spacing>
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                    <z>300</z>
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                <cell>
                    <a units="Å">307.80002</a>
                    <b units="Å">307.80002</b>
                    <c units="Å">307.80002</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
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                    <minimum>-0.084593676</minimum>
                    <maximum>0.12560128</maximum>
                    <average>-0.000033207838</average>
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                <pixel_spacing>
                    <x units="Å">1.026</x>
                    <y units="Å">1.026</y>
                    <z units="Å">1.026</z>
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                </contour_list>
                <label>::::EMDATABANK.org::::EMD-12685::::</label>
                <annotation_details>Detergent-subtracted refinement, R-domain 2, sharpened</annotation_details>
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