<emd emdb_id="EMD-1267" version="3.0.1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
    <admin>
        <current_status>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2006-08-14</deposition>
            <header_release>2006-09-18</header_release>
            <map_release>2007-09-07</map_release>
            <update>2012-10-10</update>
        </key_dates>
        <title>Structure of bacteriophage SPP1 tail reveals trigger for DNA ejection.</title>
        <authors_list>
            <author>Plisson C</author>
            <author>White HE</author>
            <author>Auzat I</author>
            <author>Sao-jose C</author>
            <author>Lhuillier S</author>
            <author>Tavares P</author>
            <author>Orlova EV</author>
        </authors_list>
        <keywords />
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Plisson C</author>
                    <author order="2">White HE</author>
                    <author order="3">Auzat I</author>
                    <author order="4">Zafarani A</author>
                    <author order="5">Sao-Jose C</author>
                    <author order="6">Lhuillier S</author>
                    <author order="7">Tavares P</author>
                    <author order="8">Orlova EV</author>
                    <title>Structure of bacteriophage SPP1 tail reveals trigger for DNA ejection.</title>
                    <journal>EMBO J.</journal>
                    <volume>26</volume>
                    <first_page>3720</first_page>
                    <last_page>3728</last_page>
                    <year>2007</year>
                    <external_references type="PUBMED">17611601</external_references>
                    <external_references type="DOI">doi:10.1038/sj.emboj.7601786</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
    </crossreferences>
    <sample>
        <name>Tail of the bacteriophage SPP1 before DNa ejection</name>
        <supramolecule_list>
            <sample_supramolecule supramolecule_id="1000">
                <name>Tail of the bacteriophage SPP1 before DNa ejection</name>
                <oligomeric_state>hexameric rings of gp17.1 and gp17.1star</oligomeric_state>
                <number_unique_components>3</number_unique_components>
            </sample_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name synonym="gp17.1">Major Tail Protein 1</name>
                <natural_source database="NCBI">
                    <organism ncbi="10724">Bacillus phage SPP1</organism>
                    <synonym_organism>Bacteriophage SPP1</synonym_organism>
                </natural_source>
                <molecular_weight>
                    <experimental units="MDa">0.0191</experimental>
                </molecular_weight>
                <details>The 180 nm-long tail tube is composed of the two
 major tail proteins, gp17.1 and gp17.1star. They
 form a stack of 45 rings arranged in a helical
 manner around gp18, the tape measure protein.</details>
                <recombinant_exp_flag>false</recombinant_exp_flag>
                <recombinant_expression database="NCBI" />
                <sequence />
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="2">
                <name synonym="gp17.1star">Major Tail Protein 2</name>
                <natural_source database="NCBI">
                    <organism ncbi="10724">Bacillus phage SPP1</organism>
                    <synonym_organism>Bacteriophage SPP1</synonym_organism>
                </natural_source>
                <molecular_weight>
                    <experimental units="MDa">0.0282</experimental>
                </molecular_weight>
                <recombinant_exp_flag>false</recombinant_exp_flag>
                <recombinant_expression database="NCBI" />
                <sequence />
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="3">
                <name synonym="gp18">Tape Measure Protein</name>
                <natural_source database="NCBI">
                    <organism ncbi="10724">Bacillus phage SPP1</organism>
                    <synonym_organism>Bacteriophage SPP1</synonym_organism>
                </natural_source>
                <recombinant_exp_flag>false</recombinant_exp_flag>
                <recombinant_expression database="NCBI" />
                <sequence />
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>helical</method>
            <aggregation_state>filament</aggregation_state>
            <specimen_preparation_list>
                <helical_preparation preparation_id="1">
                    <buffer>
                        <ph>7.5</ph>
                        <details>100 mM Tris-Cl, 100 mM NaCl, 10 mM MgCl2</details>
                    </buffer>
                    <staining>
                        <type>NEGATIVE</type>
                        <details>3.5 microliter of sample was applied onto
        carbon-coated copper       grids, which were glow-discharged
        for       30 seconds. The sample       was left for         1-2
        minutes       on the grids before blotting and         staining
        with a       solution of 2% uranyl acetate.</details>
                    </staining>
                    <grid>
                        <details>300 mesh copper grid</details>
                    </grid>
                    <vitrification>
                        <cryogen_name>NONE</cryogen_name>
                    </vitrification>
                </helical_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <helical_microscopy microscopy_id="1">
                    <microscope>FEI TECNAI F20</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">200</acceleration_voltage>
                    <nominal_cs units="mm">2.0</nominal_cs>
                    <nominal_defocus_min units="&#181;m">0.6</nominal_defocus_min>
                    <nominal_defocus_max units="&#181;m">2.0</nominal_defocus_max>
                    <nominal_magnification>50000.0</nominal_magnification>
                    <calibrated_magnification>50000.0</calibrated_magnification>
                    <specimen_holder_model>OTHER</specimen_holder_model>
                    <temperature>
                        <temperature_average units="K">298</temperature_average>
                    </temperature>
                    <alignment_procedure>
                        <legacy>
                            <astigmatism>objective lens astigmatism was corrected at 100,000
        times magnification</astigmatism>
                        </legacy>
                    </alignment_procedure>
                    <details>Low dose imaging</details>
                    <image_recording_list>
                        <image_recording>
                            <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                            <digitization_details>
                                <scanner>ZEISS SCAI</scanner>
                                <sampling_interval units="&#181;m">7</sampling_interval>
                            </digitization_details>
                            <number_real_images>15</number_real_images>
                            <average_electron_dose_per_image units="e/&#8491;^2">10</average_electron_dose_per_image>
                            <od_range>2.5</od_range>
                            <bits_per_pixel>8.</bits_per_pixel>
                        </image_recording>
                    </image_recording_list>
                    <specimen_holder>Gatan single tilt negative stain holder</specimen_holder>
                </helical_microscopy>
            </microscopy_list>
            <helical_processing image_processing_id="1">
                <final_reconstruction>
                    <applied_symmetry>
                        <helical_parameters>
                            <delta_z units="&#8491;">40</delta_z>
                            <delta_phi units="deg">21</delta_phi>
                            <axial_symmetry>C6</axial_symmetry>
                        </helical_parameters>
                    </applied_symmetry>
                    <algorithm>OTHER</algorithm>
                    <resolution res_type="BY AUTHOR" units="&#8491;">14.0</resolution>
                    <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>IMAGIC, SPIDER</name>
                        </software>
                    </software_list>
                    <details>exact filter back-projection</details>
                </final_reconstruction>
                <ctf_correction>
                    <details>phase flipping</details>
                </ctf_correction>
                <final_angle_assignment>
                    <details>IMAGIC beta range 65-115 degrees, gamma range
        0-60 degrees</details>
                </final_angle_assignment>
            </helical_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="8193">
        <file>emd_1267.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>128</col>
            <row>128</row>
            <sec>128</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>128</x>
            <y>128</y>
            <z>128</z>
        </spacing>
        <cell>
            <a units="&#8491;">179.2</a>
            <b units="&#8491;">179.2</b>
            <c units="&#8491;">179.2</c>
            <alpha units="deg">90</alpha>
            <beta units="deg">90</beta>
            <gamma units="deg">90</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-8.985480000000001</minimum>
            <maximum>6.72513</maximum>
            <average>-0.00000000107437</average>
            <std>0.94234</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">1.4</x>
            <y units="&#8491;">1.4</y>
            <z units="&#8491;">1.4</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>1.69</level>
            </contour>
        </contour_list>
        <annotation_details>CCP4 map of the helical Tail of the
      bacteriophage       SPP1 before DNA ejection</annotation_details>
        <details>::::EMDATABANK.org::::EMD-1267::::</details>
    </map>
</emd>