2021-07-14 REL PDBe PDBe PDBe 2021-03-08 2021-05-12 2021-05-12 2021-07-14 Max Planck Society Germany German Federal Ministry for Education and Research 81Z1600313 Germany Tomogram of myofibrils within a native neonatal Wistar rat cardiomyocyte Schneider J Burbaum L Jasnin M Burbaum L Schneider J Scholze S Bottcher RT Baumeister W Schwille P Plitzko JM Jasnin M Molecular-scale visualization of sarcomere contraction within native cardiomyocytes. Nat Commun UK 12 4086 4086 2021 34215727 doi:10.1038/s41467-021-24049-0 2041-1723 EMD-11825 other EM volume EMD-11826 other EM volume EMD-12572 associated EM volume Tomogram of myofibrils within a native neonatal Wistar rat cardiomyocyte Tomogram of myofibrils within a native neonatal Wistar rat cardiomyocyte 0 Rattus norvegicus Heart tomography cell 7.4 ETHANE-PROPANE OTHER OTHER 30 0.03 300 90 400 180
The value given for _emd_sectioning_focused_ion_beam.instrument is Quanta 3D FIB/SEM (Thermo Fisher Scientific). This is not in a list of allowed values {'OTHER', 'DB235'} so OTHER is written into the XML file.
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 42000.0 GATAN K2 SUMMIT (4k x 4k) COUNTING 120.0 1 BACK PROJECTION IMOD
The tomogram was reconstructed in IMOD, binned by a factor of 4, and filtered using a deconvolution filter (https://github.com/dtegunov/tom_deconv)
60 emd_12572.map.gz 1 IMAGE STORED AS SIGNED INTEGER (2 BYTES) 928 928 175 0 0 0 928 928 175 12695.04 12695.04 2394.0 90.0 90.0 90.0 X Y Z -12102.0 5216.0 470.24664 460.6295 13.68 13.68 13.68 AUTHOR Tomogram of a myofibril from neonatal Wistar rat cardiomyocytes