2024-10-23 REL PDBe PDBe PDBe 2021-03-08 2021-11-24 2021-11-24 2024-10-23 German Research Foundation (DFG) FOR2969 Germany AL amyloid fibril from a lambda 1 light chain Karimi Farsijani S Radamaker L amyloid, antibody, systemic amyloidosis, light chain, IMMUNE SYSTEM Radamaker L Karimi-Farsijani S Andreotti G Baur J Neumann M Schreiner S Berghaus N Motika R Haupt C Walther P Schmidt V Huhn S Hegenbart U Schonland SO Wiese S Read C Schmidt M Fandrich M Role of mutations and post-translational modifications in systemic AL amyloidosis studied by cryo-EM. Nat Commun UK 12 6434 6434 2021 34741031 doi:10.1038/s41467-021-26553-9 2041-1723 7nsl FULLOVERLAP Amyloid fibril of an antibody lambda 1 immunoglobulin light chain Amyloid fibril of an antibody lambda 1 immunoglobulin light chain 0 1
Extracted fibrils from the explanted heart of a patient suffering from systemic AL amyloidosis
Homo sapiens Heart Heart muscle Amyloid lambda1 light chain Homo sapiens Heart Heart muscle tissue 0.012122353999999998 7 LEVO QSVLTQPPSVSAAPGQNVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYETDKRPSGIPDRFSGSKSGTSATLGITGLQ TADEADYYCGTWESSLLAGVFGGGTKLTVLGQPKAAPS helical filament 7.0 H2O Distilled water C-flat-1.2/1.3 COPPER CARBON HOLEY GLOW DISCHARGE OTHER ETHANE 95 295 FEI VITROBOT MARK III
blot for 9s before plunging.
Sample in pure water, pH not determined
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN 20 GATAN K2 SUMMIT (4k x 4k) COUNTING 3838 3710 1 3032 40.0 1
Motion-corrected and dose-weighted movie frames
4.76311 -1.45566 C1 3.1 FSC 0.143 CUT-OFF RELION 3.0 43308 43308
manual particle picking helical start-end coordinates
Initial model generation in RELION, followed by a 3D classification of particles picked from 28 micrographs to generate rough 3D model which was used as a reference
 NOT APPLICABLE emd_12570.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 260 260 260 0 0 0 260 260 260 270.4 270.4 270.4 90.0 90.0 90.0 Z Y X -24.973224999999999 49.148029999999999 -0.000000000001876 1.0 1.04 1.04 1.04 12.0 AUTHOR OTHER
Secondary structure restraints and NCS were applied during refinement
REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS) REAL emd_12570_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 260 260 260 0 0 0 260 260 260 270.4 270.4 270.4 90.0 90.0 90.0 X Y Z -0.025948118 0.056959834 0.000021486598 0.0031861023 1.04 1.04 1.04 AUTHOR emd_12570_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 260 260 260 0 0 0 260 260 260 270.4 270.4 270.4 90.0 90.0 90.0 X Y Z -0.026804311 0.05523401 0.000031419568 0.0031822566 1.04 1.04 1.04 AUTHOR