<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-1254" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2006-08-09</deposition>
         <header_release>2006-08-09</header_release>
         <map_release>2007-08-22</map_release>
         <update>2011-05-26</update>
      </key_dates>
      <title>Hexameric ring structure of human MCM10 DNA replication factor.</title>
      <authors_list>
         <author>Okorokov AL</author>
         <author>Orlova EV</author>
      </authors_list>
      <keywords>
         </keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Okorokov AL</author>
               <author order="2">Waugh A</author>
               <author order="3">Hodgkinson J</author>
               <author order="4">Murthy A</author>
               <author order="5">Hong HK</author>
               <author order="6">Leo E</author>
               <author order="7">Sherman MB</author>
               <author order="8">Stoeber K</author>
               <author order="9">Orlova EV</author>
               <author order="10">Williams GH</author>
               <title>Hexameric ring structure of human MCM10 DNA replication factor.</title>
               <journal>EMBO REP.</journal>
               <volume>8</volume>
               <first_page>925</first_page>
               <last_page>930</last_page>
               <year>2007</year>
               <external_references type="PUBMED">17823614</external_references>
               <external_references type="DOI">doi:10.1038/sj.embor.7401064</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>recombinant human Mcm10</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>recombinant human Mcm10</name>
            <details>monodisperse</details>
            <oligomeric_state>homohexamer</oligomeric_state>
            <number_unique_components>1</number_unique_components>
            <molecular_weight>
               <experimental units="MDa">0.65</experimental>
               <theoretical units="MDa">0.59</theoretical>
               <method>size-exclusion FPLC</method>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="DNA replication factor">Mcm10</name>
            <natural_source database="NCBI">
               <organism ncbi="9606">Homo sapiens</organism>
               <synonym_organism>Human</synonym_organism>
               <cellular_location>nuclear</cellular_location>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.59</experimental>
               <theoretical units="MDa">0.65</theoretical>
            </molecular_weight>
            <details>UniProtKB/TrEMBL entry Q3MIR3</details>
            <number_of_copies>6</number_of_copies>
            <oligomeric_state>hexamer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism>Escherichia coli, Rosetta</recombinant_organism>
               <recombinant_plasmid>pProEX-HT-B</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">0.01</concentration>
               <buffer>
                  <ph>6.8</ph>
                  <details>25 mM Tris-HCl pH 9.0,   150 mM NaCl,   10 mM
          MgCl2,       50 mM KCl</details>
               </buffer>
               <staining>
                  <type>NEGATIVE</type>
                  <details>Grids were stained with   2% w/v methylamine
        tungstate,       (Nano-W, Nanoprobes Inc.) for 1 min.</details>
               </staining>
               <grid>
                  <details>400 mesh, freshly glow-discharged in air</details>
               </grid>
               <vitrification>
                  <cryogen_name>NONE</cryogen_name>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TECNAI 12</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>TUNGSTEN HAIRPIN</electron_source>
               <acceleration_voltage units="kV">100</acceleration_voltage>
               <nominal_cs units="mm">2.2</nominal_cs>
               <nominal_defocus_min units="&#181;m">1.5</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">2.5</nominal_defocus_max>
               <nominal_magnification>44000.0</nominal_magnification>
               <specimen_holder_model>OTHER</specimen_holder_model>
               <details>images were taken on FEI Technai T10 microscope       in
        low dose mode.</details>
               <date>2005-01-01</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                     <digitization_details>
                        <scanner>ZEISS SCAI</scanner>
                        <sampling_interval units="&#181;m">7</sampling_interval>
                     </digitization_details>
                     <number_real_images>15</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">15</average_electron_dose_per_image>
                     <detector_distance>500</detector_distance>
                     <od_range>1.4</od_range>
                     <bits_per_pixel>8.</bits_per_pixel>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>eucentric</specimen_holder>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <details>The particles were selected interactively at
          the       computer       terminal.  close</details>
            <ctf_correction>
               <details>each particle</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C6</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">16.0</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>Imagic</name>
                  </software>
               </software_list>
               <details>Final map was calculated from 197 best classes</details>
               <number_images_used>5000</number_images_used>
            </final_reconstruction>
            <final_two_d_classification>
               <number_classes>197</number_classes>
            </final_two_d_classification>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="6751">
      <file>emd_1254.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>120</col>
         <row>120</row>
         <sec>120</sec>
      </dimensions>
      <origin>
         <col>-60</col>
         <row>-60</row>
         <sec>-60</sec>
      </origin>
      <spacing>
         <x>120</x>
         <y>120</y>
         <z>120</z>
      </spacing>
      <cell>
         <a units="&#8491;">190.8</a>
         <b units="&#8491;">190.8</b>
         <c units="&#8491;">190.8</c>
         <alpha units="deg">90</alpha>
         <beta units="deg">90</beta>
         <gamma units="deg">90</gamma>
      </cell>
      <axis_order>
         <fast>Y</fast>
         <medium>X</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.0206095</minimum>
         <maximum>0.0700683</maximum>
         <average>0.00312238</average>
         <std>0.0090834</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">1.59</x>
         <y units="&#8491;">1.59</y>
         <z units="&#8491;">1.59</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.0255</level>
         </contour>
      </contour_list>
      <annotation_details>Surface views of human Mcm10  top  side  bottom  stereo</annotation_details>
      <details>::::EMDATABANK.org::::EMD-1254::::</details>
   </map>
   <interpretation>
      <modelling_list>
         <modelling>
            <initial_model>
               <access_code>1N25</access_code>
               <chain>
                  <chain_id>1</chain_id>
                  <chain_id>L</chain_id>
                  <chain_id>T</chain_id>
                  <chain_id>L</chain_id>
               </chain>
            </initial_model>
            <refinement_protocol>RIGID BODY FIT</refinement_protocol>
            <software_list>
               <software>
                  <name>URO</name>
               </software>
            </software_list>
            <details>Protocol: rigid body. The domains were fitted automatically using URO</details>
            <target_criteria>correlation coeficient</target_criteria>
            <refinement_space>RECIPROCAL</refinement_space>
         </modelling>
      </modelling_list>
   </interpretation>
</emd>