2024-07-10 REL PDBe PDBe PDBe 2021-02-25 2021-04-21 2021-04-21 2024-07-10 Austrian Science Fund P31445 Austria National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) R01AI147890 United States National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) R01AI150454 United States National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) R35GM136258 United States European Union (EU) Horizon 2020, iNEXT (PID4246) , Grant number 653706 European Union Structure of the mature RSV CA lattice: Group III, hexamer-hexamer interface, class 4'4 Obr M Ricana CL Retrovirus, Rous sarcoma virus, capsid protein, IP6, VIRAL PROTEIN Obr M Ricana CL Nikulin N Feathers JR Klanschnig M Thader A Johnson MC Vogt VM Schur FKM Dick RA Structure of the mature Rous sarcoma virus lattice reveals a role for IP6 in the formation of the capsid hexamer. Nat Commun UK 12 3226 3226 2021 34050170 doi:10.1038/s41467-021-23506-0 2041-1723 7nof FULLOVERLAP Rous sarcoma virus - Prague C Rous sarcoma virus - Prague C 0 1 Rous sarcoma virus - Prague C unidentified CANC polyhedra VIRUS-LIKE PARTICLE OTHER false true Capsid protein p27, alternate cleaved 1 Rous sarcoma virus (strain Prague C) Prague C 0.024773594 10 Escherichia coli BL21(DE3) LEVO PVVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITMAEVEALMSSPLLPHDVTNLMRVILGPAPYALWMDAWGVQLQTV IAAATRDPRHPANGQGRGERTNLNRLKGLADGMVGNPQGQAALLRPGELVAITASALQAFREVARLAEPAGPWADIMQGP SESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQKTA P03322 subtomogramAveraging particle 6.2 20.0 MES 2-(N-morpholino)ethanesulfonic acid 100.0 NaCl sodium chloride 2.0 TCEP tris(2-carboxyethyl)phosphine 100.0 IP6 inositol hexakisphosphate C-flat-2/2 COPPER 200 CARBON HOLEY GLOW DISCHARGE AIR ETHANE 100 277 FEI VITROBOT MARK IV
2.5 seconds blotting time.
FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 100.0 2.7 1.5 4.0 105000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GIF Quantum LS 20
Areas of interest for high-resolution data collection were identified in low magnification montages. Prior to tomogram acquisition, gain references were acquired and the filter was fully tuned. Microscope tuning was performed using the FEI AutoCTF software. The ilumination mode used during acquisition was nanoprobe.
GATAN K2 QUANTUM (4k x 4k) COUNTING 3708 3838 1-10 1 1.4 3.5 1 C2 BACK PROJECTION 7.6 FSC 0.143 CUT-OFF Dynamo 1.1.333 2408 49 220000 MATLAB R2018b IMOD 4.9 Dynamo 1.1.333
The starting positions were defined by template matching. See materials and methods for details.
 MATLAB R2018b
Subtomograms were sorted into classes based on their context in the lattice. See materials and methods for details
 OTHER Dynamo 1.1.333
Subtomogram alignment using Dynamo alignment project.
 emd_12500.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 192 192 192 0 0 0 192 192 192 254.9376 254.9376 254.9376 90.0 90.0 90.0 X Y Z -11.297646500000001 18.369281999999998 -0.0011376017 1.2006809 1.3278 1.3278 1.3278 3.8 AUTHOR RSV CA lattice: hexamer-hexamer, class 4'4" 7NO0 PDB experimental model RIGID BODY FIT Correlation coefficient