REL PDBe PDBe PDBe 2006-06-23 2006-07-26 2006-07-26 2014-03-19 The cryo-EM structure of a translation initiation complex from Escherichia coli. Allen GS Zavialov A Gursky R Ehrenberg M Frank J Allen GS Zavialov A Gursky R Ehrenberg M Frank J The cryo-EM structure of a translation initiation complex from Escherichia coli. CELL(CAMBRIDGE,MASS.) 121 703 712 2005 15935757 doi:10.1016/j.cell.2005.03.023 1zo1 FULLOVERLAP 1zo3 FULLOVERLAP E. coli 70S, IF1, IF3, mRNA, fMet-tRNA, and IF2-GDPNP E. coli 70S, IF1, IF3, mRNA, fMet-tRNA, and IF2-GDPNP One of each component binds to the 70S 7 30S false Escherichia coli ribosome-prokaryote: SSU 30S 50s false Escherichia coli ribosome-prokaryote: LSU 50S fmet-tRNA Escherichia coli TRANSFER DOUBLE HELIX false beta IF2-GDPNP Escherichia coli 1 monomer true Escherichia coli IF1 Escherichia coli 1 1 true Escherichia coli IF3 Escherichia coli 1 1 true Escherichia coli mRNA Escherichia coli OTHER SINGLE STRANDED true singleParticle particle 7.6
polymix buffer
Quantifoil
 ETHANE 90 100 OTHER
Vitrification instrument: Vitrobot
2 second blot FEI TECNAI F30 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.26 0.93 3.93 39000.0 39000.0 GATAN HELIUM 80 2003-07-04 KODAK SO-163 FILM ZEISS SCAI 14 116 1.2 12. cryo stage
automated particle picking followed by manual verification
defocus groups
 C1 OTHER 13.8 FSC 0.5 CUT-OFF SPIDER
The falloff of Fourier amplitudes toward higher spatial frequencies was corrected using the x-ray solution scattering intensity distribution of 70S ribosomes from E. coli during each round of refinement.
20283 emd_1248.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 130 130 130 -65 -65 -65 130 130 130 366.6 366.6 366.6 90 90 90 X Y Z -66.6267 212.468999999999994 4.02043 25.465199999999999 2.82 2.82 2.82 63.5 This is a 3D volume map of an E. coli 70S translation initiation complex
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 RIGID BODY FIT RSRef
Protocol: real-space refinement of rigid bodies. IF2 and IF1 were initially fit by hand in O then refined by RSRef
correlation coefficient REAL