2025-10-01 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY STRUCTURE_SUMMARY chem_comp chem_comp_atom chem_comp_bond database_2 em_admin pdbx_entry_details _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _em_admin.last_update _pdbx_entry_details.has_protein_modification STRUCTURE_SUMMARY database_2 em_admin _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _em_admin.last_update DERIVED_CALCULATIONS em_admin pdbx_validate_close_contact struct_conn _em_admin.last_update EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update PDBe PDBe 2021-02-19 2021-06-23 2021-06-23 2025-10-01 diazaborine bound Drg1(AFG2) Prattes M Hodirnau VV Grishkovskaya I Bergler H Haselbach D DRG1, AFG2, ribosome maturation, AAA protein, diazaborine, inhibitor, RIBOSOME Prattes M Grishkovskaya I Hodirnau VV Rossler I Klein I Hetzmannseder C Zisser G Gruber CC Gruber K Haselbach D Bergler H Structural basis for inhibition of the AAA-ATPase Drg1 by diazaborine. Nat Commun UK 12 3483 3483 2021 34108481 doi:10.1038/s41467-021-23854-x 2041-1723 7nku FULLOVERLAP EMDB EMD-12448 associated EM volume
diazaborine bound Drg1(AFG2)
 Drg1 (AFG2) bound to diazaborine Drg1 (AFG2) bound to diazaborine 0 1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATPase family gene 2 protein Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.08485071899999999 6 Escherichia coli LEVO MAPKSSSSGSKKKSSASSNSADAKASKFKLPAEFITRPHPSKDHGKETCTAYIHPNVLSSLEINPGSFCTVGKIGENGIL VIARAGDEEVHPVNVITLSTTIRSVGNLILGDRLELKKAQVQPPYATKVTVGSLQGYNILECMEEKVIQKLLDDSGVIMP GMIFQNLKTKAGDESIDVVITDASDDSLPDVSQLDLNMDDMYGGLDNLFYLSPPFIFRKGSTHITFSKETQANRKYNLPE PLSYAAVGGLDKEIESLKSAIEIPLHQPTLFSSFGVSPPRGILLHGPPGTGKTMLLRVVANTSNAHVLTINGPSIVSKYL GETEAALRDIFNEARKYQPSIIFIDEIDSIAPNRANDDSGEVESRVVATLLTLMDGMGAAGKVVVIAATNRPNSVDPALR RPGRFDQEVEIGIPDVDARFDILTKQFSRMSSDRHVLDSEAIKYIASKTHGYVGADLTALCRESVMKTIQRGLGTDANID KFSLKVTLKDVESAMVDIRPSAMREIFLEMPKVYWSDIGGQEELKTKMKEMIQLPLEASETFARLGISAPKGVLLYGPPG CSKTLTAKALATESGINFLAVKGPEIFNKYVGESERAIREIFRKARSAAPSIIFFDEIDALSPDRDGSSTSAANHVLTSL LNEIDGVEELKGVVIVAATNRPDEIDAALLRPGRLDRHIYVGPPDVNARLEILKKCTKKFNTEESGVDLHELADRTEGYS GAEVVLLCQEAGLAAIMEDLDVAKVELRHFEKAFKGIARGITPEMLSYYEEFALRSGSSS P32794 3.6.4.10 PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER 0.0005232469999999999 12 AGS 6-METHYL-2(PROPANE-1-SULFONYL)-2H-THIENO[3,2-D][1,2,3]DIAZABORININ-1-OL 0.00027215199999999995 6 TDB singleParticle particle 7.6 20.0 HEPES-KOH 150.0 KOAc potassium acetate 1.0 Mg(OAc)2 magnesium acetate 0.005 Tween-20 1.0 DTT Dithiotreitol 2.0 ATPyS Quantifoil R1.2/1.3 COPPER 200 CARBON HOLEY GLOW DISCHARGE ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GIF Bioquantum GATAN K3 BIOQUANTUM (6k x 4k) 60.0 1 1152861 cryoSPARC PHASE FLIPPING AND AMPLITUDE CORRECTION C6 FOURIER SPACE 3.4 FSC 0.143 CUT-OFF cryoSPARC
polished with deepenhancer
237914 MAXIMUM LIKELIHOOD cryoSPARC MAXIMUM LIKELIHOOD cryoSPARC 4 RELION emd_12448.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 271.36 271.36 271.36 90.0 90.0 90.0 X Y Z -0.0017472899 1.7435274 0.0036650223 0.038571537 1.06 1.06 1.06 0.105 AUTHOR AB INITIO MODEL correlation coefficient REAL emd_12448_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 271.36 271.36 271.36 90.0 90.0 90.0 X Y Z -1.6007195 2.2737477 0.012036038 0.065055765 1.06 1.06 1.06 AUTHOR emd_12448_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 271.36 271.36 271.36 90.0 90.0 90.0 X Y Z -0.0017421325 1.9979981 0.0037348964 0.044663504 1.06 1.06 1.06 AUTHOR