2026-09-16 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY NON_POLYMER_DESCRIPTION chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_validate_chiral _chem_comp.formula _database_2.pdbx_DOI _database_2.pdbx_database_accession REMEDIATION REPOSITORY Metalloprotein remediation STRUCTURE_SUMMARY chem_comp_atom em_admin pdbx_entry_details pdbx_modification_feature pdbx_nonpoly_atom_coordination pdbx_nonpoly_atom_coordination_sphere pdbx_nonpoly_atom_coordination_sphere_order pdbx_struct_conn_angle pdbx_validate_chiral struct_conn _chem_comp_atom.pdbx_stereo_config _em_admin.last_update _pdbx_entry_details.has_protein_modification EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update PDBe PDBe 2021-02-11 2021-05-05 2021-05-05 2026-09-16 German Research Foundation (DFG) 836/3-2 Germany German Research Foundation (DFG) 836/4-1 Germany German Research Foundation (DFG) SCHU 3364/1-1 Germany Structure of PSII-I prime (PSII with Psb28, and Psb34) Zabret J Bohn S Membrane Protein Biogenesis Assembly Factors Photosystem II, PHOTOSYNTHESIS Zabret J Bohn S Schuller SK Arnolds O Moller M Meier-Credo J Liauw P Chan A Tajkhorshid E Langer JD Stoll R Krieger-Liszkay A Engel BD Rudack T Schuller JM Nowaczyk MM Structural insights into photosystem II assembly. Nat.Plants UK 7 524 538 2021 33846594 doi:10.1038/s41477-021-00895-0 2055-0278 7nhq FULLOVERLAP EMDB EMD-12337 associated EM volume
Structure of PSII-I prime (PSII with Psb28, and Psb34)
 PSII-I prime PSII-I prime 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 Thermosynechococcus elongatus BP-1 Photosystem II protein D1 1 Thermosynechococcus elongatus BP-1 0.039762309 1 LEVO MTTTLQRRESANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVIAFIAAPPVDIDGIREPVSGSLLYGNNIITG AVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQWELSYRLGMRPWICVAYSAPLASAFAVFLI YPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGALFCAMHGSLVTSSLIRETTETESANYGYKFG QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGVWFTALGISTMAFNLNGFNFNHSVIDAKGNVINTWADI INRANLGMEVMHERNAHNFPLDLASAESAPVAMIAPSING P0A444 1.10.3.9 Photosystem II CP47 reaction center protein Thermosynechococcus elongatus BP-1 0.056656457 1 LEVO MGLPWYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYELATFDPSDPVLNPMWRQGMFVLPFMARLGVTGSWSGWSI TGETGIDPGFWSFEGVALAHIVLSGLLFLAACWHWVYWDLELFRDPRTGEPALDLPKMFGIHLFLAGLLCFGFGAFHLTG LFGPGMWVSDPYGLTGSVQPVAPEWGPDGFNPYNPGGVVAHHIAAGIVGIIAGLFHILVRPPQRLYKALRMGNIETVLSS SIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDSSYFQQEINRRVQASLASGATLEEAWSAIPEKLAFYDYIGNNPA KGGLFRTGPMNKGDGIAQAWKGHAVFRNKEGEELFVRRMPAFFESFPVILTDKNGVVKADIPFRRAESKYSFEQQGVTVS FYGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLNSDGIFRTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDVFS GIDPELSPEQVEWGFYQKVGDVTTRRKEAV Q8DIQ1 Photosystem II CP43 reaction center protein Thermosynechococcus elongatus BP-1 0.0502875 1 LEVO MVTLSSNSIFATNRDQESSGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFELAHFIPEKPMYEQGLILIPHI ATLGWGVGPGGEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEEYSSFFGYDWKDKNKMTTILGFHLIVLGIGA LLLVAKAMFFGGLYDTWAPGGGDVRVITNPTLDPRVIFGYLLKSPFGGEGWIVSVNNLEDVVGGHIWIGLICIAGGIWHI LTTPFGWARRAFIWSGEAYLSYSLGALSMMGFIATCFVWFNNTVYPSEFYGPTGPEASQAQAMTFLIRDQKLGANVGSAQ GPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAPLGSLNSVGGVAT EINSVNFVSPRSWLATSHFVLAFFFLVGHLWHAGRARAAAAGFEKGIDRESEPVLSMPSLD Q8DIF8 Photosystem II D2 protein Thermosynechococcus elongatus BP-1 0.039388156 1 LEVO MTIAIGRAPAERGWFDILDDWLKRDRFVFVGWSGILLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVST PANSMGHSLLLLWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFEIARLVGVRPYNAIAFSAPIAVFVSVFLIY PLGQSSWFFAPSFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFQDGEGASTFRAFNPTQA EETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRSYDFISQEIRAAEDPEFETFYTKNLL LNEGIRAWMAPQDQPHENFVFPEEVLPRGNAL Q8CM25 1.10.3.9 Cytochrome b559 subunit alpha Thermosynechococcus elongatus BP-1 0.00958084 1 LEVO MAGTTGERPFSDIITSVRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPDSYYAQEQRSIPLVTDRFEAKQQVETFL EQLK Q8DIP0 Cytochrome b559 subunit beta Thermosynechococcus elongatus BP-1 0.005067899999999999 1 LEVO MTSNTPNQEPVSYPIFTVRWVAVHTLAVPTIFFLGAIAAMQFIQR Q8DIN9 Photosystem II reaction center protein H Thermosynechococcus elongatus BP-1 0.0073587539999999995 1 LEVO MARRTWLGDILRPLNSEYGKVAPGWGTTPLMAVFMGLFLVFLLIILEIYNSTLILDGVNVSWKALG Q8DJ43 Photosystem II reaction center protein I Thermosynechococcus elongatus BP-1 0.004410244999999999 1 LEVO METLKITVYIVVTFFVLLFVFGFLSGDPARNPKRKDLE Q8DJZ6 Photosystem II reaction center protein K Thermosynechococcus elongatus BP-1 0.005028082999999999 1 LEVO MIDALVLVAKLPEAYAIFDPLVDVLPVIPVLFLALAFVWQAAVGFR Q9F1K9 Photosystem II reaction center protein L Thermosynechococcus elongatus BP-1 0.004299043999999999 1 LEVO MEPNPNRQPVELNRTSLYLGLLLILVLALLFSSYFFN Q8DIN8 Photosystem II reaction center protein M Thermosynechococcus elongatus BP-1 0.003981673 1 LEVO MEVNQLGLIATALFVLVPSVFLIILYVQTESQQKSS Q8DHA7 Photosystem II reaction center protein T Thermosynechococcus elongatus BP-1 0.0038787279999999997 1 LEVO METITYVFIFACIIALFFFAIFFREPPRITKK Q8DIQ0 Photosystem II reaction center X protein Thermosynechococcus elongatus BP-1 0.004322225999999999 1 LEVO MTITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQRSL Q9F1R6 Photosystem II reaction center protein Ycf12 Thermosynechococcus elongatus BP-1 0.005039142999999999 1 LEVO MGIFNGIIEFLSNINFEVIAQLTMIAMIGIAGPMIIFLLAVRRGNL Q8DJI1 Photosystem II reaction center protein Z Thermosynechococcus elongatus BP-1 0.006766187 1 LEVO MTILFQLALAALVILSFVMVIGVPVAYASPQDWDRSKQLIFLGSGLWIALVLVVGVLNFFVV Q8DHJ2 Photosystem II reaction center Psb28 protein Thermosynechococcus elongatus BP-1 0.013188769 1 LEVO MGAMAEIQFIRGINEEVVPDVRLTRARDGSSGQAMFYFDNPKIVQEGNLEVTGMYMVDEEGEIVTRDVNAKFINGQPVAI EATYTMRSPQEWDRFIRFMDRYAASHGLGFQKSENS Q8DLJ8 Tsl0063 protein Thermosynechococcus elongatus BP-1 0.005943893 1 LEVO MRYTTDEGGRLNNFAIEPKVYQAQPWTPQQKVRAALLVGGGLLLVAGLVAIAVGVS Q8DMP8 FE (III) ION 5.5845e-05 1 FE MANGANESE (II) ION 5.4938e-05 1 MN CHLORIDE ION 3.5453e-05 1 CL PHEOPHYTIN A 0.0008712 2 PHO CHLOROPHYLL A 0.000893489 35 CLA BETA-CAROTENE 0.000536873 10 BCR 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE 0.00072297 1 LHG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE 0.0007871579999999999 7 LMG 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE 0.000749201 1 PL9 PROTOPORPHYRIN IX CONTAINING FE 0.000616487 1 HEM singleParticle particle 6.5 ETHANE-PROPANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K3 (6k x 4k) 55.0 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 2.68 FSC 0.143 CUT-OFF 91479 PROJECTION MATCHING PROJECTION MATCHING emd_12337.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 260 260 260 0 0 0 260 260 260 283.4 283.4 283.4 90.0 90.0 90.0 X Y Z -0.029516868 0.06450061 0.0000032393905 0.0018405834 1.09 1.09 1.09 0.006 AUTHOR CryoEM of PSII-I' (Psb28 and Psb34)