VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

2024-05-01 REL PDBe PDBe PDBe 2021-02-10 2021-05-05 2021-05-05 2024-05-01 German Research Foundation (DFG) WI3285/8-1 Germany Swedish Research Council 2017-03783 Sweden Swedish Research Council 2019-01085 Sweden European Regional Development Fund 2014-2020.4.01.15-0013 Sweden Estonian Research Council PRG335 Estonia Swedish Research Council 2018-00956 Sweden VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes Crowe-McAuliffe C Turnbull KJ Antibiotic resistance element, ABCF, antibiotic resistance, ATPase, protein synthesis, RIBOSOME Crowe-McAuliffe C Murina V Turnbull KJ Kasari M Mohamad M Polte C Takada H Vaitkevicius K Johansson J Ignatova Z Atkinson GC O'Neill AJ Hauryliuk V Wilson DN Structural basis of ABCF-mediated resistance to pleuromutilin, lincosamide, and streptogramin A antibiotics in Gram-positive pathogens. Nat Commun UK 12 3577 3577 2021 34117249 doi:10.1038/s41467-021-23753-1 2041-1723 7nhn FULLOVERLAP VgaL in complex with 70S ribosome, mRNA, and distorted P-tRNA from Listeria monocytogenes VgaL in complex with 70S ribosome, mRNA, and distorted P-tRNA from Listeria monocytogenes 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 Listeria monocytogenes EGD-e 2.2 Lmo0919 protein Listeria monocytogenes EGD-e 0.064280094 1 Listeria monocytogenes EGD-e LEVO MSTIEINQLKIEVADRVLVEIPHLLVSKKARIGIIGQNGLGKTTLMEVIAGAKEATSGTVTTQGKLAYIKQLSTDTSTKS GGEKTRKATQHAMRQNPSVLLADQPTSNLDVESVKHLERQWSDFHGALIIISHDRAFLDALCTEIWEIKNQKIHVYKGNY HAYLEQKQQQENQAELAYKEFKNKKKQLQASQTHHEIEAGRIVKPGKRLNNKEASAFKAGKGTQQKKQHSTIKALEKRIE RLGNVEKPHTTKPIKIITPDNRVIKKGNTILSAKETAYEIAGRKLFETKAFSIKAGDKVALIGENASGKTTFLKEIIQEN PNLLCNPQAKIAYFDQELNGLNQTKSLLENISEISVQTKQVNREVLGSMHFKESDLHKEVRMLSGGERVKLLLSMLLLSD ANFLILDQPTNYLDIYAMEALETLIKQFAGTVLFVSHDRTFVNHVAEQLLVIENNEMNFHRMTFAEYEESKAPSRITEED KLILEMRMSEIAAKLMQPNLKPTEKAILEQDYQEIITKRQQFSGGHHHHHHAKGGENLYFQGVADYKDHDGDYKDHDIDY KDDDDKG Q8Y8I3 tRNA-fMet Listeria monocytogenes EGD-e 0.024788754 1 GCGGGGUGGAGCAGUCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUAGGUUCAAAUCCUGCCCCCGCAACCCA RNA (5'-R(P*GP*AP*GP*GP*UP*NP*NP*NP*NP*NP*NP*AP*UP*G)-3') Listeria monocytogenes EGD-e 0.003783178 1 GAGGU(N)(N)(N)(N)(N)(N)AUG 23S rRNA Listeria monocytogenes EGD-e 0.949689812 1 UUAAGUUAGAAAGGGCGCACGGUGGAUGCCUUGGCACUAGGAGCCGAAGAAGGACGGGACUAACACCGAUAUGCUUUGGG GAGCUGUACGUAAGCGUUGAUCCAGAGAUUUCCGAAUGGGGGAACCCACUAUCUUUAGUCGGAUAGUAUCCUUACGUGAA UACAUAGCGUGAGGAAGGCAGACCCAGGGAACUGAAACAUCUAAGUACCUGGAGGAAGAGAAAGAAAAAUCGAUUUCCUG AGUAGCGGCGAGCGAAACGGAAAGAGCCCAAACCAAGAAGCUUGCUUCUUGGGGUUGUAGGACACUCUAUACGGAGUUAC AAAAGAAAGUUAUAAAUGAAGCGGUCUGGAAAGGCCCGCCAAAGACGGUAACAGCCCGGUAGUUGAAAUGGCUUUCCCUC CAGAGUGGAUCCUGAGUACGGCGGAACACGUGAAAUUCCGUCGGAAUCCGGGAGGACCAUCUCCCAAGGCUAAAUACUCC CUAGUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGUGAAAAGCACCCCGGAAGGGGAGUGAAACAGUUCCUGAAACC GUGUGCCUACAAGUAGUUAGAGCCCGUUAAUGGGUGAUAGCGUGCCUUUUGUAGAAUGAACCGGCGAGUUACGAUUUGUU GCAAGGUUAAGCGGAAAAAGCGGAGCCGUAGCGAAAGCGAGUCUGAAUAGGGCGCAUAAGUAACAGGUCGUAGACCCGAA ACCAGGUGAUCUACCCAUGUCCAGGAUGAAGGUAAGGUAAUACUUACUGGAGGUCCGAACCCACGCACGUUGAAAAGUGC GGGGAUGAGGUGUGGGUAGCGGAGAAAUUCCAAUCGAACUUGGAGAUAGCUGGUUCUCUCCGAAAUAGCUUUAGGGCUAG CCUCGAGGUAAAGAGUCAUGGAGGUAGAGCACUGUUUGGACUAGGGGCCCUUCUCGGGUUACCGAAUUCAGAUAAACUCC GAAUGCCAUGUACUUAUACUCGGGAGUCAGACUGCGAGUGAUAAGAUCCGUAGUCGAAAGGGAAACAGCCCAGACCACCA GUUAAGGUCCCCAAAUAUAUGUUAAGUGGAAAAGGAUGUGGGGUUGCUUAGACAACCAGGAUGUUGGCUUAGAAGCAGCC ACCAUUGAAAGAGUGCGUAAUAGCUCACUGGUCGAGUGACCCCGCGCCGAAAAUGUACCGGGGCUAAACAUAUUACCGAA ACUGUGGAUGAACCUCUUUAGAGGUUCGUGGUAGGAGAGCGUUCUAAGGGCGGUGAAGUCAGACCGGAAGGACUGGUGGA GCGCUUAGAAGUGAGAAUGCCGGUAUGAGUAGCGAAAGAAGGGUGAGAAUCCCUUCCACCGAAUAUCUAAGGUUUCCUGA GGAAGGCUCGUCCGCUCAGGGUUAGUCGGGACCUAAGCCGAGGCCGAUAGGCGUAGGCGAUGGACAACAGGUAGAGAUUC CUGUACCAGUGCUAAUUGUUUAACCGAUGGGGUGACACAGAAGGAUAGGGAAUCGCACGAAUGGAAAUGUGCGUCCAAGC AGUGAGUGUGAGAAGUAGGCAAAUCCGCUUCUCGCGAAGCAUGAGCUGUGAUGGGGAAGGAAAUUAAGUACGGAAGUUCC UGAUUUCACGCUGUCAAGAAAAGCCUCUAGGAAGAGUAGUACUGCCCGUACCGCAAACCGACACAGGUAGAUGAGGAGAG AAUCCUAAGGUGAGCGAGAGAACUCUCGUUAAGGAACUCGGCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUCUAU UAGGGUGCAAGCCCGAGAGAGCCGCAGUGAAUAGGCCCAGGCGACUGUUUAGCAAAAACACAGGUCUCUGCAAAACCGUA AGGUGACGUAUAGGGGCUGACGCCUGCCCGGUGCUGGAAGGUUAAGAGGAGUGCUUAGCUUCGGCGAAGGUACGAAUUGA AGCCCCAGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCCGCACGA AAGGCGCAACGAUCUGGGCACUGUCUCAACGAGAGACUCGGUGAAAUUAUAGUACCUGUGAAGAUGCAGGUUACCCGCGA CAGGACGGAAAGACCCCGUGGAGCUUUACUGCAACCUGAUAUGGAAUGUUUGUACCGCUUGUACAGGAUAGGUAGGAGCC GAAGAGACGUGUGCGCUAGCAUACGAGGAGGCAAUGGUGGGAUACUACCCUGGCUGUAUGACCAUUCUAACCCGCCACGC UUAGCGCGUGGGGAGACAGUGUCAGGUGGGCAGUUUGACUGGGGCGGUCGCCUCCUAAAGAGUAACGGAGGCGCCCAAAG GUUCCCUCAGAAUGGAUGGAAAUCAUUCGCAGAGUGUAAAGGCACAAGGGAGCUUGACUGCGAGACUGACAAGUCGAGCA GGGACGAAAGUCGGGCUUAGUGAUCCGGUGGUUCCGCAUGGAAGGGCCAUCGCUCAACGGAUAAAAGCUACCCCGGGGAU AACAGGCUUAUCUCCCCCAAGAGUCCACAUCGACGGGGAGGUUUGGCACCUCGAUGUCGGCUCGUCGCAUCCUGGGGCUG UAGUCGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGCACGCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGU CCCUAUCCGUCGCGGGCGCAGGAAAUUUGAGAGGAGCUGUCCUUAGUACGAGAGGACCGGGAUGGACACACCGCUGGUGU ACCAGUUGUUCCGCCAGGAGCAUCGCUGGGUAGCUAUGUGUGGCAGGGAUAAACGCUGAAAGCAUCUAAGCGUGAAGCCC CCCUCAAGAUGAGAUUUCCCAUUUCUUCGGAAAGUAAGAUCCCUGAAAGAUGAUCAGGUAGAUAGGUUUGGAGUGGAAGU GUAGCGAUACAUGGAGCGGACAAAUACUAAUCGAUCGAGGACUUAACC 16S rRNA Listeria monocytogenes EGD-e 0.499378531 1 GAGAGUUUGAUCCUGGCUCAGGACGAACGCUGGCGGCGUGCCUAAUACAUGCAAGUCGAACGAACGGAGGAAGAGCUUGC UCUUCCAAUGUUAGUGGCGGACGGGUGAGUAACACGUGGGCAACCUGCCUGUAAGUUGGGGAUAACUCCGGGAAACCGGG GCUAAUACCGAAUGAUAAAGUGUGGCGCAUGCCACGCUUUUGAAAGAUGGUUUCGGCUAUCGCUUACAGAUGGGCCCGCG GUGCAUUAGCUAGUUGGUAGGGUAAUGGCCUACCAAGGCAACGAUGCAUAGCCGACCUGAGAGGGUGAUCGGCCACACUG GGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUAGGGAAUCUUCCGCAAUGGACGAAAGUCUGACGGAGCAAC GCCGCGUGUAUGAAGAAGGUUUUCGGAUCGUAAAGUACUGUUGUUAGAGAAGAACAAGGAUAAGAGUAACUGCUUGUCCC UUGACGGUAUCUAACCAGAAAGCCACGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGUGGCAAGCGUUGUCCGG AUUUAUUGGGCGUAAAGCGCGCGCAGGCGGUCUUUUAAGUCUGAUGUGAAAGCCCCCGGCUUAACCGGGGAGGGUCAUUG GAAACUGGAAGACUGGAGUGCAGAAGAGGAGAGUGGAAUUCCACGUGUAGCGGUGAAAUGCGUAGAUAUGUGGAGGAACA CCAGUGGCGAAGGCGACUCUCUGGUCUGUAACUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCU GGUAGUCCACGCCGUAAACGAUGAGUGCUAAGUGUUAGGGGGUUUCCGCCCCUUAGUGCUGCAGCUAACGCAUUAAGCAC UCCGCCUGGGGAGUACGACCGCAAGGUUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUU AAUUCGAAGCAACGCGAAGAACCUUACCAGGUCUUGACAUCCUUUGACCACUCUGGAGACAGAGCUUUCCCUUCGGGGAC AAAGUGACAGGUGGUGCAUGGUUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUG AUUUUAGUUGCCAGCAUUUAGUUGGGCACUCUAAAGUGACUGCCGGUGCAAGCCGGAGGAAGGUGGGGAUGACGUCAAAU CAUCAUGCCCCUUAUGACCUGGGCUACACACGUGCUACAAUGGAUAGUACAAAGGGUCGCGAAGCCGCGAGGUGGAGCUA AUCCCAUAAAACUAUUCUCAGUUCGGAUUGUAGGCUGCAACUCGCCUACAUGAAGCCGGAAUCGCUAGUAAUCGUGGAUC AGCAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCACGAGAGUUUGUAACACCCGAAGUCGG UAGGGUAACCUUUAUGGAGCCAGCCGCCGAAGGUGGGACAGAUAAUUGGGGUGAAGUCGUAACAAGGUAGCCGUAUCGGA AGGUGCGGCUGGAUCACCUCCU CP023861.1 50S ribosomal protein L2 Listeria monocytogenes EGD-e 0.030568366999999996 1 LEVO MAIKKYKPTTNGRRHMTSSDFAEITTSTPEKSLLRPLKKKAGRNNQGKLTVRHHGGGHKRQYRVIDFKRNKDGIPGRVAT IEYDPNRSANIALINYADGEKRYIIAAKGLEVGQTIYSGAEADIKVGNALELKDIPVGTVIHNIEMKPGKGGQLVRSAGT SAQVLGKEGKYVLIRLNSGEVRMILATCRATIGQVGNEQHELINIGKAGRSRWMGKRPTVRGSVMNPNDHPHGGGEGKAP IGRKSPMSPWGKPTLGYKTRKKNNNSDKFIVRRRKKK P60426 50S ribosomal protein L3 Listeria monocytogenes EGD-e 0.022863459 1 LEVO MTKGILGRKVGMTQVFTENGELIPVTVIEAAQNVVLQKKTVETDGYEAVQIGFEDKRAILSNKPEQGHVAKANTTPKRFI REFRDVNLDEYEIGAEVKVDVFAEGDIIDATGVSKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMGPVAPNRVFKNKLL PGRMGGEQITIQNLEIVKVDVEKNVLLVKGNVPGAKKALVQIKTATKAK Q8Y440 50S ribosomal protein L4 Listeria monocytogenes EGD-e 0.022640261999999998 1 LEVO MPKLSLLKQDGTNAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGGGRKPWRQKGTGRARQGSIRS PQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNEEKLVVLEGLTFDAPKTKEFAAFLKNISVDTKALIVVAGES ENVELSARNLQGITVIPAESISVLEVAKHDKLIITKAAVEKVEEVLA P61055 50S ribosomal protein L5 Listeria monocytogenes EGD-e 0.020023247999999997 1 LEVO MNRLKDQYLKEIVPALMSKFNYDSVMEVPKIDKIVINTGVGDATANAKVLDSAVEELALITGQKPVITKAKNSIAGFRLR EGMPIGAKVTLRGERMYDFLDKLVTVSLPRVRDFRGVSKKAFDGRGNYTLGVREQLIFPEIDYDQVSKVRGMDVVIVTTA KSDEESHELLTQLGMPFQK Q927L9 50S ribosomal protein L6 Listeria monocytogenes EGD-e 0.019434365000000002 1 LEVO MSRIGKKTIVIPAGVTVTLNGSTATVKGPKGELVKEFNPEITIKIEGNEINVSRPTDNKNHRALHGTTRAILNNMVVGVS EGYEKKLELIGVGYRAQKQGDKLVLNVGYSHPVEFVAPKGVDIEVPANTQVIVKGYNKEHVGELAANIRAVRPPEPYKGK GIRYEGEHVRRKEGKTGK Q8Y444 50S ribosomal protein L13 Listeria monocytogenes EGD-e 0.016227671 1 LEVO MRTTYMAKPGEVERKWYVIDATGVSLGRLSSEVASILRGKNKPQFTPHIDTGDFVIIINAGKIGLTGKKATDKIYYRHSQ YPGGLKSRTAGEMRTNNPEKLLELSIKGMLPKNSLGRQLFKKLHVYGGSEHEHAAQQPEVYELRG Q8Y458 50S ribosomal protein L14 Listeria monocytogenes EGD-e 0.013248426999999998 1 LEVO MIQQESRMKVADNSGAREVLTIKVLGGSGRKTANIGDVVVCTVKQATPGGVVKKGEVVKAVIVRTKSGARRQDGSYIKFD ENACVIIRDDKSPRGTRIFGPVARELRENNFMKIVSLAPEVL Q927L7 50S ribosomal protein L15 Listeria monocytogenes EGD-e 0.015812118 1 LEVO MKLHELKPSEGSRKERNRVGRGTGSGNGKTSGRGHKGQKARSGGGVRLGFEGGQLPLFRRIPKRGFTNINRKEFAIVNLD VLNRFEDGTEVTPELLVETGIIRNEKSGIKILSNGNIEKKLTVKANKFSAAAKEAIEAAGGKTEVI Q8Y447 50S ribosomal protein L16 Listeria monocytogenes EGD-e 0.016171043 1 LEVO MLVPKRVKYRREFRGNMRGRAKGGTEVAFGEYGLQAVEASWITNRQIEAARIAMTRYMKRGGKVWIKIFPHKSYTSKPIG VRMGKGKGAPEGWVSPVKRGKIMFEIAGVPEDVAREALRLAAHKLPVKTKIVKREEIGGEANES Q927L4 50S ribosomal protein L17 Listeria monocytogenes EGD-e 0.015246793 1 LEVO MGYRKLGRTSSQRKALLRDLATDLIVFERIETTEARAKEIRKVVEKLITSGKKGDLHARRQAAAFIRHEVVEVVQVDAKG KDGSTVKKNRPVYALQKLFDDVAPRYAERQGGYTRILKKGPRRGDGAPMVIIELV Q8Y450 50S ribosomal protein L18 Listeria monocytogenes EGD-e 0.013121935999999999 1 LEVO MITKIDKNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQIIDDVNGVTLASASNLDKDFGSAESKVDAASKVGELV AKRASEKGITSVTFDRGGYLYHGRVKALAEAARENGLEF Q8Y445 50S ribosomal protein L19 Listeria monocytogenes EGD-e 0.013146462999999999 1 LEVO MNKLIDEITKSQLNPDVPNFRPGDTVRVHAKVVEGTRERIQLFEGVVIKRRGAGISETFTVRKISNSVGVERTFPVHTPR IAKLEVIRRGKVRRAKLYYLRNLRGKAARIKEIR O53083 50S ribosomal protein L20 Listeria monocytogenes EGD-e 0.01371935 1 LEVO MPRVKGGTVTRKRRKKIVKLAKGYYGSKHLLFKVANQAVMKSYQYAYRDRRQKKRDFRRLWIARINAAARMQDLSYSKLM HGLKLAGIDINRKMLADLAVNDIASFNTLADSAKKALAK P66103 50S ribosomal protein L21 Listeria monocytogenes EGD-e 0.011234029 1 LEVO MYAIIETGGKQIKVEAGQEIYVEKLAGEVGDVVTFDKVLFVGGDSAKVGVPFVEGATVTAKVEKQGRAKKLTVYKYKPKK NYHKKQGHRQPYTKLTIDAINA Q8Y6Y9 50S ribosomal protein L22 Listeria monocytogenes EGD-e 0.012895944999999999 1 LEVO MASEVTSAKAVAKTVRIAPRKARIVIDLIRGKQVGEAIAILKYTPRSASPIIEKVLKSAIANAEHNYDLDINNLVVEEAF VDEGPTLKRFRPRAQGRASAINKRTSHITVVVSEVKEG Q927L2 50S ribosomal protein L23 Listeria monocytogenes EGD-e 0.010935654 1 LEVO MDARDIIKRPVVTEESTSILDDKKYTFEVDTRATKTQVKYAVEEIFDVKVAKVNVMNYKGKLKRMGRYAGYTNKRRKAIV TVTADSKEIQFFEV Q8Y441 50S ribosomal protein L24 Listeria monocytogenes EGD-e 0.011205304 1 LEVO MHVKKGDKVKVITGKDKGKSGKVLAAFPKKDRVLIEGINMVKKHTKPSNVNPQGGILNVEAPIHVSNVMLIDPKTGEPTR VGYEVKGDKKVRVAKKSGEVIDK Q8Y443 50S ribosomal protein L27 Listeria monocytogenes EGD-e 0.01057193 1 LEVO MLKFDIQHFAHKKGGGSTSNGRDSESKRLGAKRADGQFVTGGSILYRQRGTKIYPGTNVGRGGDDTLFAKTDGVVRFERM GRDKKKVSVYPEVQEA P66125 50S ribosomal protein L28 Listeria monocytogenes EGD-e 0.007010382999999999 1 LEVO MAKECVITGRKSRSGNKRSHAMNSSKRTWKANLQKVRILVNGKPKKVWVSARALKSGKVERV P66144 50S ribosomal protein L29 Listeria monocytogenes EGD-e 0.007414547999999999 1 LEVO MKANDIRDLSTTEIQDQEKALKEELFNLRFQLATGQLENTARIREVRKAIARMKTIVRERELA P66166 50S ribosomal protein L30 Listeria monocytogenes EGD-e 0.006504752999999999 1 LEVO MAKLEITLKRSLIGRPQPQRKTVQALGLGKTNSVVVKEDNPAIRGMITKVSHLVDVKEV Q927M5 50S ribosomal protein L32-2 Listeria monocytogenes EGD-e 0.006534564 1 LEVO MAVPFRRTSKAKKRKRRTHVKLQLPGMNECSNCGEYRLSHHVCPECGQYDGKDVANS P66207 50S ribosomal protein L33 1 Listeria monocytogenes EGD-e 0.006021034 1 LEVO MRVNITLECTECGDRNYITTKNKRENPERIELKKYCPRLRRVTLHRETK P66219 50S ribosomal protein L34 Listeria monocytogenes EGD-e 0.0053194570000000005 1 LEVO MKRTYQPSKRKRKKVHGFRTRMSTKNGRRVLASRRRKGRKVLSA P66248 50S ribosomal protein L35 Listeria monocytogenes EGD-e 0.007746438 1 LEVO MPKMKTHRGSAKRFKRTGSGKLKRRHGFTSHMFANKSQKQKRKLRKSAMVSAGDFKRIRQMVAKMK P0A491 50S ribosomal protein L36 Listeria monocytogenes EGD-e 0.0043364599999999994 1 LEVO MKVRPSVKPMCEKCKVIRRKGKVMVICENPKHKQKQG P66290 5S rRNA Listeria monocytogenes EGD-E 0.036692707 1 CUGGUAGUUAUGGCGAGAAGGUCACACCCGUUCCCAUCCCGAACACGGUAGUUAAGCUUCUCUGCGCCAAUGGUAGUUGG GGGCUUCCCCCUGCGAGAGUAGGUCGCUGCCGGG 30S ribosomal protein S2 Listeria monocytogenes EGD-e 0.028417776999999998 1 LEVO MPVISMKQLLEAGVHFGHQTRRWNPKMKKYIFTERNGIYIIDLQKTVKKVDEAFNFMREVASDNGTILFVGTKKQAQESV RDEAIRSGQYFVNHRWLGGTLTNFETIQKRIQHLKKIERMEADGTFEVLPKKEVVLLKKEQEKLERFLGGIKDMKGLPDA LFIVDPRKERIAVAEARKLHIPIIGIVDTNCDPDEIDYVIPANDDAIRAVKLLTAKMADAIIEVNQGEELTEAEVAPVEE KATEETTEA Q8Y6M6 30S ribosomal protein S3 Listeria monocytogenes EGD-e 0.024587157999999998 1 LEVO MGQKVHPIGMRIGVIRDWDSKWYAEKDYADFLHEDLRIRDYVAKRLSDASVSRVEIERAANRVNITIHTAKPGMVIGKGG SEVEALRKNLNELTQKRVHINIVEIKRADLDAKLVAENIARQLEGRVSFRRAQKQAIQRTMRAGAKGIKTQVSGRLGGAD IARAEHYSEGTVPLHTLRADIDYAWEEADTTYGKLGVKVWIYRGEVLPTKKNNVEGGK P66548 30S ribosomal protein S4 Listeria monocytogenes EGD-e 0.022773991999999996 1 LEVO MARYTGPSWKVSRRLGISLSGTGKELERRPYAPGQHGPTQRKKISEYGLQQAEKQKLRHMYGLTERQFKNTFNKAGKLRG KHGENFMILLEQRLDNIVYRLGLARTRRAARQLVNHGHITVDGKRVDIPSYQVSVGQVISVREKSAKNSAIAESLEVSSF VPEYVTFDAEKLTGSLNRLPERSELAAEINEAFIVEFYSR Q8Y6T6 30S ribosomal protein S5 Listeria monocytogenes EGD-e 0.017482166 1 LEVO MPEQIDGNKLDLEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGHVGFGTGKAQEVPDAIRKAVEDAKKNMVLVPTVDT TIPHTVVGHFGGGEILLKPASAGSGVTAGGPVRAVLELAGVADVSSKSLGSNTPINMVRATIDGIKQLKNAEDVAKLRGK TVEELLG Q8Y446 30S ribosomal protein S6 Listeria monocytogenes EGD-e 0.01152609 1 LEVO MARKYEIMYIIRPNIEEDEKKAVVERFDGILTENGAEIIESKEWGKRRLAYEINDYRDGFYHIVKLNADKADSINEFDRL AKISDDIIRHMVIKEEA Q8YAR9 30S ribosomal protein S7 Listeria monocytogenes EGD-e 0.017848815999999997 1 LEVO MPRKGPVAKRDVLPDPIYNSKLVTRLINKMMVDGKRGKSQAILYSAFDIIAQETGKDPMEVFEQAMKNIMPLLEVKARRV GGANYQVPIEVRADRRSTLGLRWLVNYARLRGEKTMEVRVAREIMDAANNTGASVKKREDTHKMADANRAFAHYRW P66611 30S ribosomal protein S8 Listeria monocytogenes EGD-e 0.014667118 1 LEVO MVMTDPIADFLTRIRNANMVKHDKLELPASKIKKEIAEILKREGFIRDVEYIEDDNAGTIRVFLKYGATGERVITGLKRI SKPGLRVYAKSTEVPKVLNGLGIAIVSTSQGVLTDKEARAKQVGGEVLAYVW P66623 30S ribosomal protein S9 Listeria monocytogenes EGD-e 0.014397641 1 LEVO MAQVQYYGTGRRKSSVARVRLVPGDGKIVINNRDWEDYIPFAALREVIKQPLVATETLGNYDVLVNVHGGGYTGQAGAIR HGVARALLQVAPEYRPALKSAGLLTRDSRMKERKKPGLKGARRAPQFSKR Q8Y459 30S ribosomal protein S10 Listeria monocytogenes EGD-e 0.011703660999999999 1 LEVO MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGASVSGPIPLPTEKSIYTVLRAVHKYKDSREQFEMRTHKRLIDIVNPT PQTVDSLMRLDLPSGVDIEIKL P66330 30S ribosomal protein S11 Listeria monocytogenes EGD-e 0.013812903999999999 1 LEVO MARKTNTRKRRVKKNIESGIAHIRSTFNNTIVMITDTHGNALAWSSAGSLGFKGSRKSTPFAAQMAAESAAKSAQEHGLK TLEVTVKGPGSGREAAIRALQAAGLEVTAIKDVTPVPHNGCRPPKRRRV P66352 30S ribosomal protein S12 Listeria monocytogenes EGD-e 0.015216778 1 LEVO MPTINQLVRKPRQSKIKKSTSPALNKGLNSFKRELTDVNSPQKRGVCTRVGTMTPKKPNSALRKYARVRLSNGIEVTAYI PGIGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDTAGVENRGQSRSKYGTKKPKK P66372 30S ribosomal protein S13 Listeria monocytogenes EGD-e 0.013738978999999998 1 LEVO MARIAGVDVPREKRIVISLTYIYGIGKQTAKEVLAEAGVSEDTRTRDLTEEELGKIREILDRIKVEGDLRREVNLNIKRL IEIGSYRGMRHRRGLPVRGQNTKNNARTRKGPSKTVAGKKK P66383 30S ribosomal protein S14 type Z Listeria monocytogenes EGD-e 0.007164716 1 LEVO MAKKSMIAKQKRTPKYAVQAYTRCERCGRPHSVIRKFKLCRICFRELAYKGQIPGVKKASW P66401 30S ribosomal protein S15 Listeria monocytogenes EGD-e 0.010656375 1 LEVO MALTQERKNEIIAEYRVHDTDTGSPEVQIAVLTAEINSLNEHVRVHKKDHHSYRGLMKMVGHRRNLLTYLRKKDVQRYRE LIKRLGLRR Q92C24 30S ribosomal protein S16 Listeria monocytogenes EGD-e 0.010386158 1 LEVO MAVKIRLKRIGSKKKPFYRIVVADSRFPRDGRSIETIGTYNPLLDPVEVKIDEEATLKWMHNGAKPSDTVRNLLSREGIM EKFHNQKLGK Q8Y699 30S ribosomal protein S17 Listeria monocytogenes EGD-e 0.010057699 1 LEVO MADRNQRKVYTGRVVSDKMDKTITVVVETYKKHGLYGKRVKYSKKFKAHDENNIAKTGDVVRISETRPLSATKHFRLLEV VEEAVII Q927L6 30S ribosomal protein S18 Listeria monocytogenes EGD-e 0.009119831 1 LEVO MAGGRRGGRRRKKVCYFTSNGITHIDYKDVELLKKFVSERGKILPRRVTGTSAKYQRKLTVAIKRSRQMALLPFVAEEK P66461 30S ribosomal protein S19 Listeria monocytogenes EGD-e 0.010498116 1 LEVO MGRSLKKGPFVDDHLMKKVEAAAESEKKQVIKTWSRRSTIFPTFVGQTIAVYDGRKHVPVYVQEDMVGHKLGEFAPTRTY RGHAGDDKKTKR P66484 30S ribosomal protein S20 Listeria monocytogenes EGD-e 0.009189573 1 LEVO MPNIKSAIKRVKTAETRNSRNASQRSAMRTAIKKFDEAAANNADNAKDLYVEASKKLDSAVSKGLIHKNNAARNKSRLAA KLAK P66503 50S ribosomal protein L31 type B Listeria monocytogenes EGD-e 0.00927436 1 LEVO MKTGIHPEYRPVVFVDTSTDFKFLSGSTKSSSETIKWEDGNEYPLLRVEISSDSHPFYTGKQKHATADGRVDRFNKKYGL K P0A485 ADENOSINE-5'-TRIPHOSPHATE 0.000507181 2 ATP MAGNESIUM ION 2.4305e-05 143 MG SPERMIDINE 0.000145246 2 SPD POTASSIUM ION 3.9098e-05 21 K ZINC ION 6.5409e-05 3 ZN singleParticle particle 7.5 ETHANE 100 277.15 FEI VITROBOT MARK III FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 -0.7000000000000001 -1.9000000000000001 165000.0 GATAN K2 SUMMIT (4k x 4k) 1 26.3 1 83340 Generated by RELION using 70S particles from 2D classification. 2.9 FSC 0.143 CUT-OFF 45548 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_12334.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 352 352 352 0 0 0 352 352 352 366.432 366.432 366.432 90.0 90.0 90.0 X Y Z -0.09580157 0.17329556 0.0005648646 0.0057928376 1.041 1.041 1.041 0.025 AUTHOR ::::EMDATABANK.org::::EMD-12334:::: VgaL in complex with 70S ribosome from Listeria monocytogenes. Post-processed with automatically estimated B-factor. emd_12334_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 352 352 352 0 0 0 352 352 352 366.432 366.432 366.432 90.0 90.0 90.0 X Y Z -0.014881722 0.048036046 0.00063565595 0.0029426222 1.041 1.041 1.041 AUTHOR ::::EMDATABANK.org::::EMD-12334:::: VgaL in complex with 70S ribosome from Listeria monocytogenes. Filtered by local resolution. emd_12334_additional_3.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 352 352 352 0 0 0 352 352 352 366.432 366.432 366.432 90.0 90.0 90.0 X Y Z -0.08109665 0.16265887 0.00032726192 0.0045946185 1.041 1.041 1.041 AUTHOR ::::EMDATABANK.org::::EMD-12334:::: Multibody refinement of large ribosomal subunit and vgaL NBDs. emd_12334_additional_4.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 352 352 352 0 0 0 352 352 352 366.432 366.432 366.432 90.0 90.0 90.0 X Y Z -0.06269824 0.12555063 0.000079410456 0.0021361667 1.041 1.041 1.041 AUTHOR ::::EMDATABANK.org::::EMD-12334:::: Multibody refinement of small ribosomal subunit head. emd_12334_additional_5.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 352 352 352 0 0 0 352 352 352 366.432 366.432 366.432 90.0 90.0 90.0 X Y Z -0.061289497 0.13761391 0.00014011799 0.0028811528 1.041 1.041 1.041 AUTHOR ::::EMDATABANK.org::::EMD-12334:::: Multibody refinement of small ribosomal subunit body. emd_12334_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 352 352 352 0 0 0 352 352 352 366.432 366.432 366.432 90.0 90.0 90.0 X Y Z -0.015847467 0.05011196 0.0014873064 0.0032331042 1.041 1.041 1.041 AUTHOR ::::EMDATABANK.org::::EMD-12334:::: VgaL in complex with 70S ribosome from Listeria monocytogenes. Output of RELION Refine3D. emd_12334_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 420 420 420 0 0 0 420 420 420 344.4 344.4 344.4 90.0 90.0 90.0 X Y Z -0.042018835 0.07865588 0.000026490088 0.0061543793 0.82 0.82 0.82 AUTHOR ::::EMDATABANK.org::::EMD-12334:::: VgaL in complex with 70S ribosome from Listeria monocytogenes. Half map 2. emd_12334_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 420 420 420 0 0 0 420 420 420 344.4 344.4 344.4 90.0 90.0 90.0 X Y Z -0.040145162 0.07946926 0.000020395772 0.0061255237 0.82 0.82 0.82 AUTHOR ::::EMDATABANK.org::::EMD-12334:::: VgaL in complex with 70S ribosome from Listeria monocytogenes. Half map 1.