2021-07-21 REL PDBe PDBe PDBe 2021-02-10 2021-07-07 2021-07-07 2021-07-21 German Research Foundation (DFG) EN 1194/1-1 (FOR2092) Germany In situ cryo-electron tomogram of a cluster of VIPP1-mCherry structures inside the Chlamydomonas chloroplast Wietrzynski W Klumpe S Heinz S Spaniol B Schaffer M Rast A Nickelsen J Schroda M Engel BD Gupta TK Klumpe S Gries K Heinz S Wietrzynski W Ohnishi N Niemeyer J Spaniol B Schaffer M Rast A Ostermeier M Strauss M Plitzko JM Baumeister W Rudack T Sakamoto W Nickelsen J Schuller JM Schroda M Engel BD Structural basis for VIPP1 oligomerization and maintenance of thylakoid membrane integrity. Cell 184 3643 3659.e23 2021 34166613 doi:10.1016/j.cell.2021.05.011 1097-4172 EMD-12330 associated EM volume VIPP1-mCherry structures inside the Chlamydomonas chloroplast VIPP1-mCherry structures inside the Chlamydomonas chloroplast 0 Chlamydomonas reinhardtii tomography cell 7.0 Quantifoil R2/1 COPPER 200 CARBON HOLEY GLOW DISCHARGE AIR ETHANE-PROPANE FEI VITROBOT MARK IV OTHER OTHER 30 0.03 1800 91 8000 300
See https://bio-protocol.org/e1575 for detailed procedure.. The value given for _emd_sectioning_focused_ion_beam.instrument is FEI Aquilos FIB. This is not in a list of allowed values {'OTHER', 'DB235'} so OTHER is written into the XML file.
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 70.0 2.7 4.0 5.5 42000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GIF Quantum LS 20
Dose-symmetric tilt-series were acquired (Hagen et al., 2017), starting at +10 degrees to match the pre-tilt of the lamella (i.e. from -50 to +70 degrees).
GATAN K2 SUMMIT (4k x 4k) COUNTING 1.0 2.0 1 BACK PROJECTION IMOD 61 IMOD emd_12330.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 928 928 464 0 0 0 928 928 464 13066.24 13066.24 6533.12 90.0 90.0 90.0 X Y Z -0.9428644 0.7545099 -0.0014345653 0.063188165 14.08 14.08 14.08 AUTHOR Contrast-enhanced tomogram by denoising using Cryo-CARE. This is a binned tomogram at 4x the original pixel size. emd_12330_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 928 928 464 0 0 -232 928 928 464 13066.24 13066.24 6533.12 90.0 90.0 90.0 X Y Z -4.7923856 3.6525772 0.06838809 0.45402956 14.08 14.08 14.08 AUTHOR Original dose-filtered tomogram reconstruction. This is a binned tomogram at 4x the original pixel size.