2021-04-21 REL PDBe PDBe PDBe 2021-01-22 2021-02-10 2021-02-10 2021-04-21 Reprocessing of EMPIAR-10389 data (urease) with Scipion Sharov G Morado DR Carroni M de la Rosa-Trevin JM Sharov G Morado DR Carroni M de la Rosa-Trevin JM Using RELION software within the Scipion framework. Acta Crystallogr D Struct Biol 77 403 410 2021 33825701 doi:10.1107/S2059798321001856 2059-7983 EMD-10835 other EM volume EMD-12236 associated EM volume Urease oligomer from Y. enterocolitica Urease oligomer from Y. enterocolitica 0 Yersinia enterocolitica singleParticle particle 0.39 7.0 Quantifoil R1.2/1.3 COPPER 300 CARBON HOLEY ARRAY GLOW DISCHARGE ETHANE 90 293.15 FEI VITROBOT MARK IV
3 sec blot time.
FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GIF Quantum LS 20 GATAN K2 SUMMIT (4k x 4k) COUNTING 1-40 4495 8.0 42.0 1 CTFFIND 4.1.14 RELION 3.1.0 1 T FOURIER SPACE 2.14 FSC 0.143 CUT-OFF RELION 3.1.0 89600 MAXIMUM LIKELIHOOD RELION 3.1.0 SGD algorithm PROJECTION MATCHING RELION 3.1.0 4 RELION 3.1.0 emd_12236.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 327.168 327.168 327.168 90.0 90.0 90.0 X Y Z -0.12085977 0.20793961 8.715665e-06 0.0060192966 0.639 0.639 0.639 0.0287 AUTHOR Map produced by Relion plugin in Scipion, filtered according to local resolution. The hand was flipped and the map was realigned to match EMD-10835 emd_12236_msk_1.map emd_12236_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 327.168 327.168 327.168 90.0 90.0 90.0 X Y Z -0.066941075 0.12057057 1.6438173e-05 0.0037771033 0.639 0.639 0.639 AUTHOR Map produced by Relion plugin in Scipion, postprocessed. emd_12236_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 327.168 327.168 327.168 90.0 90.0 90.0 X Y Z -0.023238434 0.037200525 4.3555538e-06 0.0021805041 0.639 0.639 0.639 AUTHOR Half-map 2 for postprocessing, produced by Relion plugin in Scipion emd_12236_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 327.168 327.168 327.168 90.0 90.0 90.0 X Y Z -0.023067469 0.036796253 4.341918e-06 0.002175866 0.639 0.639 0.639 AUTHOR Half-map 1 for postprocessing, produced by Relion plugin in Scipion