Red alga C.merolae Photosystem I

2026-09-16 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update REMEDIATION REPOSITORY Metalloprotein remediation STRUCTURE_SUMMARY chem_comp chem_comp_atom em_admin pdbx_modification_feature pdbx_nonpoly_atom_coordination pdbx_nonpoly_atom_coordination_sphere pdbx_nonpoly_atom_coordination_sphere_order pdbx_struct_conn_angle pdbx_validate_chiral struct_conn _chem_comp.formula _chem_comp_atom.pdbx_stereo_config _em_admin.last_update PDBe PDBe 2021-01-19 2022-03-02 2022-03-02 2026-09-16 Israel Science Foundation 569/17 Israel Red alga C.merolae Photosystem I Nelson N Klaiman D Red alga C.merolae Photosystem I, PHOTOSYNTHESIS Nelson N Klaiman D Hippler M Red alga C.merolae Photosystem I To Be Published 0353 7blz FULLOVERLAP PDB 5zgh unspecified EMDB EMD-12228 associated EM volume

Photosystem I Photosystem I 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 Cyanidioschyzon merolae strain 10D Similar to light harvesting protein Cyanidioschyzon merolae (strain 10D) 10D 0.019551574 1 LEVO QSPALPFLSKPPNLSPDMPGYRGFDPLRFSDAFDVNWLQEGEIKNGRVAMLACLHFFVTEFYQFPFFAGAPKLAGPAHDY FVKSGAMIQILAFIGFLEFLLHRGKVLYSDMEWKGRKPGELGFNPLNLPNDKAMRDREVNNGRLAMLGFAGIIHGEFLNG KMPFEQITNFQPL M1VKK5 Similar to chlorophyll a/b-binding protein, CP24 Cyanidioschyzon merolae (strain 10D) 10D 0.019796849999999998 1 LEVO GATMPSMPFLKRPSKLDGSLPGGEGCFDPLGFTEVFSLEWLREAEIKHCRVAMLAVLGVIAQEFGTFDFYNAKSKLQLSP DLHNQFVQNGALQQILLFVCAWEFIVGLPALIESVNGNREPGYFGFDPLKLGGTVGSAQWKRMQAGELRNGRLAMIAFGG FFHQQLLTKQGIIEQLAHF M1UU36 Lhcr3 Cyanidioschyzon merolae (strain 10D) 10D 0.019041044999999996 1 LEVO VPFAPVPEAVRESGLAGSEAEFDPLMITSYLPISWMRESEVKHGRIAMLAFVGTLAQQAYQFPWYKGAPTTLVGAHDHFV TTALAQILLFTSAFEIVAGVPAAIQTVRGSGRLPGYYGFDPLGLWGKDEASRKRMELAEVKNGRLAMIAMLALWHQEVLS GGMGVIEQLVKQKF Photosystem I P700 chlorophyll a apoprotein A1 Cyanidioschyzon merolae (strain 10D) 10D 0.082215789 1 LEVO EKQVKVVVDRDVVPTSFEKWAKPGHFSRSLAKGPKTTTWIWNLHADAHDFDSHTSSLEEVSRKIFSAHFGQLAIIFIWLS GMYFHGARFSNYVAWLSNPTGIKPSAQVVWPIVGQQILNADVGGGMQGIQITSGLFQLWRASGIVNELQLYVTALGGLGM AGLMIFAGWFHYHKAAPKLEWFQNVESMLNHHLAGLLGLGSLSWAGHQIHVSLPINKLLDAGVAPSSIPLPHEFILNRNL MAELYPSFQQGLVPFFTLNWKQYSDILTFKGGLSPVTGGLWLTDVAHHHLAIAVLFLVAGHMYRTNWGIGHSIKQILEAH KGPLTGEGHKGLYEILTTSWHANLAINLAMLGSLSIIVAHHMYAMPPYPYLATDYPTQLSLFTHHMWIGGFCIVGAGAHA AIYMVRDYSPTVNFNNVLDRMIRHRDAIISHLNWVCIFLGMHSFGLYIHNDTMRALGRAQDMFSDTAIQLQPVFAQWIQQ IHTLAPGNTAVNALATASYAFGADTVTVGSKIAMMPIKLGTADFMVHHIHAFTIHVTTLILLKGVLYARNSRLIPDKANL GFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNALSIVIFHFSWKMQSDVWGTVTSNGAISHITGGNFAQSAITINGWLRD FLWAQASQVIQSYGSSLSAYGLMFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIAPRALSITQGRAVGV AHYLLGGIATTWAFFLARIIAVG Q85FY7 1.97.1.12 Photosystem I P700 chlorophyll a apoprotein A2 Cyanidioschyzon merolae (strain 10D) 10D 0.081976656 1 LEVO ATKFPKFSQALASDPTTRRIWYGIATAHDFESHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWVANP LKTKPLAHAIWDPHFGQAALKAFTRGDTVANISYSGVYHWWYTIGIRNNVELYTGALGLLVLSAVFLLAGWLHIQPKFKP SLSWFKNNESRLNHHLAGLFGVSSLAWTGHLVHVAIPASRGQHVGWDNFIMTPPHPAGLQPFFTGNWSVYAQSPDSMQHV FGTSQGAGTAILTFLGGFHPQTQSLWLTDMAHHHLAIAVIFIVAGHMYRTNFGIGHNLKTILEAHRPPSGRLGKGHIGIY QTLTNSLHFQLGLALASLSVVTSLVAQHMYAMPPYAYMAFDYVTQSALYTHHQYIAGLLIVGAFAHGAIFFIRDYDPEQN QDNVLARMLAHKEAVISHLSWVSLFLGFHTLGLYVHNDVVVAFGNPEKQILIEPIFAQWIQATSGKMLYGFQVLLSSSTS NASVAAQQLWLPGWLEAVNNESNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPG RGGTCDISAWDAFYLAMFWMLNTIGWVTFYWHWKHLSLWQGNVAQFNESSTYLMGWLRDYLWLNSSPLINGYNPYGMNSL AVWSWMFLFAHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLVGLVHFTVGYILTYAA FVIASTAGKFS Q85FY6 1.97.1.12 Photosystem I iron-sulfur center Cyanidioschyzon merolae (strain 10D) 10D 0.008691075999999999 1 LEVO AHTVKIYDNCIGCTQCVRACPLDVLEMVPWDGCKAGQMASAPRTEDCVGCKRCETACPTDFLSIRVYLGGETTRSMGLAY Q85G47 1.97.1.12 Photosystem I p700 chlorophyll A apoprotein A2 Cyanidioschyzon merolae (strain 10D) 10D 0.015567736 1 LEVO LNLKMPSPSFLGSTGGWLRCAETEEKYAMTWSSDQQHIFEMPTGGAAVMNSGDNLLYLARKEQALALATQLRTQFKIQDY KIYRIFPSGEVQYLHPKDGVLPYQVNKGREQVGRVKSTIGKNVNPAQVKFTSKATYDR Q85FY0 Photosystem I iron-sulfur center subunit VII Cyanidioschyzon merolae (strain 10D) 10D 0.00698504 1 LEVO IKKGSLVKILRPESFWYNEVGTVVNVETSKVLYPVLVRFDKVNYSGLNSTNFSLDELVEIK Q85FZ1 PSI-F Cyanidioschyzon merolae (strain 10D) 10D 0.017997396 1 LEVO VLTPCQQSEAFHKREINEVRTLENRQANYEANSPSYLALQSQIDQVHKRFDKYGTLLCGQDGLPHLITDGDWRHAREFTI PALLFLYITGWIGWVGRSYLKYTKETKNPTEQEIILDVPMALKYMLSGFLWPLSAWQEYRSGQLLAKEDEITVSP A0A5P9RU83 Photosystem I reaction center subunit VIII Cyanidioschyzon merolae (strain 10D) 10D 0.0032769879999999998 1 LEVO SASYLPSILVPTVGLILPFASMAILFIAIEK Q85FQ6 Photosystem I reaction center subunit IX Cyanidioschyzon merolae (strain 10D) 10D 0.004410244999999999 1 LEVO MNLKKYLSTAPVVATLWLFLTAGILIELNRFFPDSLFY A0A5P9RTH6 PSI-K Cyanidioschyzon merolae (strain 10D) 10D 0.005608732 1 LEVO YTIPTIMVISNLVGVAVGRYALGRSDLTQLIASMCFGHIIGVGIVLGLSNMGVI Q85G51 Photosystem I reaction center subunit XI Cyanidioschyzon merolae (strain 10D) 10D 0.01469097 1 LEVO DYIKPYNNDPFVGHLATPINSSSLTRAYLSQLPIYRRGVSPFLRGLEIGMAHGYFLIGPFVQLGPLRNTDIKYLAGLLSA IGLIVILTLGMLLYGAVSFTNDSQDLESVDGWRQLASGFLLGAVGGAGFAYLLLTL Q85FP8 Photosystem I reaction center subunit XII Cyanidioschyzon merolae (strain 10D) 10D 0.0029376039999999995 1 LEVO ITDNQVFVALIMALVCGYLAVKLAKQL Q85G73 PsaO Cyanidioschyzon merolae (strain 10D) 10D 0.010485055 1 LEVO FEVSDGEPYPLNPAVIFIALIGWSAVAAIPSNIPVLGGTGLTQAFLASIQRLLAQYPTGPKLDDPFWFYLIVYHVGLFAL LIFGQIGYAGYAKGTYN M1VFJ4 CHLOROPHYLL A 0.000893489 132 CLA (1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol 0.000568871 13 C7Z (3R)-beta,beta-caroten-3-ol 0.0005528719999999999 5 RRX 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE 0.00072297 6 LHG ERGOSTEROL 0.000396648 3 ERG BETA-CAROTENE 0.000536873 22 BCR (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE 0.000751023 2 PGT DIACYL GLYCEROL 0.000625018 2 DGA DODECYL-ALPHA-D-MALTOSIDE 0.000510615 2 LMU PHOSPHATIDYLETHANOLAMINE 0.0007340389999999999 4 PTY CHLOROPHYLL A ISOMER 0.000893489 1 CL0 PHYLLOQUINONE 0.000450696 2 PQN IRON/SULFUR CLUSTER 0.00035163999999999996 3 SF4 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE 0.000704998 3 3PH Phosphatidylinositol 0.000887128 1 T7X DIGALACTOSYL DIACYL GLYCEROL (DGDG) 0.0009492989999999999 3 DGD CALCIUM ION 4.0078e-05 2 CA water 1.8015e-05 249 HOH singleParticle particle 8.0 Quantifoil R1.2/1.3 COPPER ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K3 BIOQUANTUM (6k x 4k) 7220 40.0 1 1198564 CTFFIND 4.1 NONE 5ZGH 8 3.1 FSC 0.143 CUT-OFF RELION 3.1.0 128943 ANGULAR RECONSTITUTION RELION 3.1.0 ANGULAR RECONSTITUTION RELION 3.1.0 8 16117.0 RELION 3.1.0 emd_12228.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 315.59998 315.59998 315.59998 90.0 90.0 90.0 X Y Z -0.07398664 0.16311452 0.00028240826 0.0065125544 1.0519999 1.0519999 1.0519999 0.0186 AUTHOR ::::EMDATABANK.org::::EMD-12228:::: RIGID BODY FIT REAL emd_12228_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 315.59998 315.59998 315.59998 90.0 90.0 90.0 X Y Z -0.019555893 0.09283571 0.00028158465 0.0029243384 1.0519999 1.0519999 1.0519999 AUTHOR ::::EMDATABANK.org::::EMD-12228:::: emd_12228_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 315.59998 315.59998 315.59998 90.0 90.0 90.0 X Y Z -0.02012044 0.09311108 0.0002832319 0.002922712 1.0519999 1.0519999 1.0519999 AUTHOR ::::EMDATABANK.org::::EMD-12228::::